Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12945g00003 ATGGGACCCACAGCATGGTACGGCCTGTCTCCCAAGGCTGAGCCACGTCAAAACGACACATCAACCTTCTCACACTCTAATTCAATTCTAGCTCGACAACGCATCGTACCTCAACCCCTCTCTCCAATCACATCTCGACAACGCATCAATTATCAATTAAGCACCAAGATGGGAAGGGGTAGGGTTCAGCTGAAGCGGATCGAGAACAAAACCAGTCAGCAAGTCACGTTTTCCAAGCGCAGAACCGGACTTCTCAAGAAAGCGCACGAAATCTCTGTGCTGTGCGATGCTCAGATCGCTTTGATTATGTTCTCTACCAAAGGCAAACTTTTTGAGTATTCCTCTGAACGCAGTCTATTTATGGTTGGTCACTTATCTCTTAAGTCTTAA 390 0.4667 MGPTAWYGLSPKAEPRQNDTSTFSHSNSILARQRIVPQPLSPITSRQRINYQLSTKMGRGRVQLKRIENKTSQQVTFSKRRTGLLKKAHEISVLCDAQIALIMFSTKGKLFEYSSERSLFMVGHLSLKS 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12945g00003 129 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 66 113 IPR002100 GO:0003677|GO:0046983
Mupr12945g00003 129 ProSiteProfiles MADS-box domain profile. 57 117 IPR002100 GO:0003677|GO:0046983
Mupr12945g00003 129 PANTHER SERUM RESPONSE FACTOR HOMOLOG 59 117 - -
Mupr12945g00003 129 SUPERFAMILY SRF-like 58 117 IPR036879 GO:0003677|GO:0046983
Mupr12945g00003 129 SMART madsneu2 57 116 IPR002100 GO:0003677|GO:0046983
Mupr12945g00003 129 CDD MADS_MEF2_like 58 115 IPR033896 GO:0000977|GO:0045944
Mupr12945g00003 129 PRINTS MADS domain signature 59 79 IPR002100 GO:0003677|GO:0046983
Mupr12945g00003 129 PRINTS MADS domain signature 79 94 IPR002100 GO:0003677|GO:0046983
Mupr12945g00003 129 PRINTS MADS domain signature 94 115 IPR002100 GO:0003677|GO:0046983
Mupr12945g00003 129 Gene3D - 69 125 IPR036879 GO:0003677|GO:0046983
Mupr12945g00003 129 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12945g00003 Mupr-Chr12945 14583 15778 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12945g00003 57 122 MADS-box Gene Family AT1G26310 77.273 2.37e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr12945g00003 SRF-TF 7.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12945g00003 K09264 - gmx:100786580 118.242