Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12941g00005 ATGGATGGAAGGAGGCATTCTGTTGACATTCCTATTTCCAAAACTCTTGTGGCACTGAGGAGAGTGAGGTCACTGAGGGATCCATCAACTAATGGTATTAGCACACTCTCTCCTTTGATTGATGATGGGGATTGGGAAAATGGTTCTAGTAATGGGGTTTCTCTGAGTTTGAGGTTCCTGAATGCTTCTCATGCTGGTGATTGTGATGATAACAATGGTTTTTTAAGATCAAATAGTTTAGAGTGCAAGGGACAAAGGGAGGAGTACAGTGCTGAGTTTGAATTGGACATGTTGAACTCTAGGATGAACTATTATTGTGGGATCTCATGTCGGGAAGGGCAACAAGATGATGGACTAGTTTACTCTAATCCTAAGCAGCAAGGTATTTCTAGGGATAAATCACCAAATGAAAGCTGTTGTAGCAACCATGAAGGTGGAGGGTTGGATTTGGTTTCCATCATGCCTCCTTGTAATCATTTGAAGAATGGGGAGTCATGCTATTTGTCAACTGCAATAAGAGTAGATAACTCAAAGTCAGCAAGAAAATCACTATGCAAGAATCAAGTGAAACCATCTGAAGTGATGGGTGATATTGCAAGCCATGTAGGAAGTCAACAATGCCTTCCTGTCCTTGATGCTCTCTCAGCTCATAGTGCCTCCAAACATATCACTCAAGATGTTGATGTTTTAGATAATCACCATGGATGTGGATTAAGGAGTTGTTGGTCAAAGTCACCAAGGTTTAGAGAATCAAATCATTATTCTAAATTAGAAGGCCTTCCCTTGATATTGCAGCACGTAAATGAGATGGATGTCGATGGAAATAGAAACACGAGACATGTTGGTGGTGAAATCAGTCCATCTTGGGAAACTCCTAGAAGTTTATCTATGAAATTCAGGCCAAAATCTTTCAGTGATTTGGTAGGTCAAAATGTGATGGGAAAGTCTCTTTCAGGAGCTATCTCTAGAGGAAGGATATCATCATTTTATCTCTTCTATGGTCCACGTGGCACGGGCAAGACCTCTGCGTCTAGGATATTTGCTGCTGCACTGAATTGCCTCTCCTCTGTGGAGCAAAAGCCATGTGGCCTGTGTAGAGAGTGTGTTTTGTTCTTTTCTGGAAGAAGTAAAAACGTTAAGGAAGTGGATTCTTTGGGAATCAATCGTGCCGACAAGGTTAAATCCCTTGTTAAGAATGCATTGATCGCTCCAGTTTCCTCACGTTTTAAGGTGTTCATTATTGATGAGTGCCAGCTATTGCATGGGGAAACATGGGCGTGTCTTTTGAATAGCCTAGAGAATGTTTCTCCACATGTGGTTTTTGTGATGATCACTCCTGATTTGGATAAGCTTCCCCGGAGTGCAGTTTCCCGGGCTCAGAGGTATCACTTTGCAAAGATTAAAGATGCTGACATTGCAAGCAGATTGGAAAAGATTTGTGTTGAAGAAGGTCTTGAATTTGAACAAGTTGCTTTGGACTTCATTGCTGCTAGATCCTGTGGTTCTCTTAGGGATGCTGAAACTATGCTAGATCAACTGAGTTTGCTTGGTAAAAAAATTACTATTTCCTTAGTCCGGGAGCTTACTGGGGTCATTTCTGATGATGAATTGCTTGATTTGCTGGACCTGGCTTTATCGTCTGACACTTCAAATACAGTTATAAGAGCCCGGGAACTTGTCAGAACAAGGATAGATCCTTTACAACTTATATCGCAGTTGGCAAATCTTATTATGGACATTCTTGCAGGGAAATGTGAACTTGGTGGTTCTGAAATCAGAAGAAGATTTTGTAATCGATATACCTCGGAAGTAGACATGCAGAAACTAAGTCATGCATTAAGAATACTGTCTGAAACAGAGAAGCACTTGAGAATTTCCAAGAATCAAACAACATGGTTCACTGCAGCTCTTCTACAGTTAAGCTCTGTAGAATATTCATCTGTGGATACAAATGATACAATGTTGTGTACACGAGCTGTGTCTAATAGAGATGGTGATATCTGCACTACATCTCCTAAAGGGGACAACTTGGAGCATCTTGCTACAGCAGGTCAATGTGATGACAAGTCATATAGATTAGGAGAACAGGAGGATCACAGAGGGACATTGGATTCTATATGGTATAAAGCTACTGAGATGTGTCAATCTAGCCGGCTCAAAACTTTTCTCAGGAAACAGGGGAAGTTGTCTTCAGTTTGTATTAATCAAGGCCGTGCAGTTGTTGAGTTGGAGTTCCACCATCGTGACTATGTAAGTAGGGCAGAGAAGTCATGGAAGCTGATTGCAAGTTCCCTGCAGTTCATATTGGGTTGTAACCTTGAGCTCAGAATCAATTGTGTACCTTCTTGTACTTCGGATTCTATGTATGATAAATTGAAGAGGTCATCTTTCAATTTCTTCGGTTGTTCTCGTAGAATTCGTTGGAAATCATTATCATCTAATGAACAAGGAAGCGAATCAGACTATGCTGAATACACCTCTCAAAAGCCCATGATGATGGATCAAACTCTAACTTGTTCCTCTGATTGCGGATCTCGGGTGCCACCATTTGAGTCTTACAATGGAATGCAGGTTGTGACAACTTTGAGAAGTAGTGAAGGAAATTTGCTAAGCTCAGGGAAAATGCTTTTAAATAGGTCAGTTCAAGAGACTCCAAGATTTTCTTGTTCTAGAGTTGTAGATATGATCAGGAACCCTGTGTCTTTTCCCACAGCTCTAACAACTACACCAAAGATGCTGAGGAAAAGTAGGTTCTTTTGCATCTCCATCATTATCTTTGTTTATGACTATTGTGCATCTTTAGGTGAGGGTATAGGCTATGCCAACTTCATATTGCTAGCTCAAACAGAAAATGAGGAAGGAAAGCGTGTATTGGATAAGTCACATGTTGAGGGTGCGTGCTTCTCTACACCACAGCCAAGTAGCTCAAGACATATGAAACCTGATGCATTAGTTGAGCAGAGCTGGCATGAGTTATACATACTTCAGCACAATTTTGCTAGTCAAGAAGTTTGGTTGAATGCTAATCAACATGGGGAGAGATATCCATTAGGCATTGAAAAGATACACCTATTATTGAAGTTCATTTCTTTTCTTGACAAGTTATGGTTTCTAAGAGATGTTGTTAATGAGAACATAATTTCCCTCCGA 3150 0.4063 MDGRRHSVDIPISKTLVALRRVRSLRDPSTNGISTLSPLIDDGDWENGSSNGVSLSLRFLNASHAGDCDDNNGFLRSNSLECKGQREEYSAEFELDMLNSRMNYYCGISCREGQQDDGLVYSNPKQQGISRDKSPNESCCSNHEGGGLDLVSIMPPCNHLKNGESCYLSTAIRVDNSKSARKSLCKNQVKPSEVMGDIASHVGSQQCLPVLDALSAHSASKHITQDVDVLDNHHGCGLRSCWSKSPRFRESNHYSKLEGLPLILQHVNEMDVDGNRNTRHVGGEISPSWETPRSLSMKFRPKSFSDLVGQNVMGKSLSGAISRGRISSFYLFYGPRGTGKTSASRIFAAALNCLSSVEQKPCGLCRECVLFFSGRSKNVKEVDSLGINRADKVKSLVKNALIAPVSSRFKVFIIDECQLLHGETWACLLNSLENVSPHVVFVMITPDLDKLPRSAVSRAQRYHFAKIKDADIASRLEKICVEEGLEFEQVALDFIAARSCGSLRDAETMLDQLSLLGKKITISLVRELTGVISDDELLDLLDLALSSDTSNTVIRARELVRTRIDPLQLISQLANLIMDILAGKCELGGSEIRRRFCNRYTSEVDMQKLSHALRILSETEKHLRISKNQTTWFTAALLQLSSVEYSSVDTNDTMLCTRAVSNRDGDICTTSPKGDNLEHLATAGQCDDKSYRLGEQEDHRGTLDSIWYKATEMCQSSRLKTFLRKQGKLSSVCINQGRAVVELEFHHRDYVSRAEKSWKLIASSLQFILGCNLELRINCVPSCTSDSMYDKLKRSSFNFFGCSRRIRWKSLSSNEQGSESDYAEYTSQKPMMMDQTLTCSSDCGSRVPPFESYNGMQVVTTLRSSEGNLLSSGKMLLNRSVQETPRFSCSRVVDMIRNPVSFPTALTTTPKMLRKSRFFCISIIIFVYDYCASLGEGIGYANFILLAQTENEEGKRVLDKSHVEGACFSTPQPSSSRHMKPDALVEQSWHELYILQHNFASQEVWLNANQHGERYPLGIEKIHLLLKFISFLDKLWFLRDVVNENIISLR 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12941g00005 1050 Gene3D - 288 465 IPR027417 -
Mupr12941g00005 1050 SMART AAA_5 326 469 IPR003593 GO:0016887
Mupr12941g00005 1050 FunFam Protein STICHEL-like 1 isoform C 531 644 - -
Mupr12941g00005 1050 SUPERFAMILY post-AAA+ oligomerization domain-like 537 638 IPR008921 GO:0003677|GO:0006260
Mupr12941g00005 1050 CDD HLD_clamp_pol_III_gamma_tau 467 530 IPR045085 -
Mupr12941g00005 1050 Gene3D - 468 530 - -
Mupr12941g00005 1050 Pfam DNA polymerase III, delta subunit 310 467 - -
Mupr12941g00005 1050 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 295 699 - -
Mupr12941g00005 1050 FunFam DNA polymerase III subunit gamma/tau 468 530 - -
Mupr12941g00005 1050 Gene3D - 531 644 - -
Mupr12941g00005 1050 NCBIfam DNA polymerase III subunit gamma/tau 294 640 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Mupr12941g00005 1050 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 298 525 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12941g00005 Mupr-Chr12941 20671 26163 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12941g00005 285 623 Core DNA Replication Machinery Family AT1G21690 24.571 9.98e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12941g00005 - - pcin:129308301 1114.75