Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12921g00001 ATGGAAGACGAAATGTACGGCGTGCCGTCGACGGCGGAGTACTCCGACAAGGCGTTGATGACGCCGGAGAACATATTTCCGGCCGAGTACCACAGCTTCCTAATGTCCTCCGGCGGCCGGATTCCGATGTTCGGATCCGACGAGTTGCTCTCCGCGGCCGTGACCGTCACCGCCGAACCCTACCCCAACGTAACCATCGCACCAGAAATTCAGCGCCACAACGACACATCTTCCTTCGTCAAAGCCAAAATCGCTTCTCACCCTCACTATCCTCGCCTCCTGCAAGCCTACATCGATTGCCAGAAGGTGGGAGCGCCTCCAGAAATCGCGTGTTTATTAGAAGAAATCCGACTAGAAAATGACGTTTGCAAGAGGGACGTTGTTTCCACGTGCGTTGGAGCCGATCCCGAACTCGATGAGTTCATGGAAACCTACTGTGACATGCTGGTGAAATACAAATCTGATCTGACGCGGCCTTTTGACGAAGCCACCACCTTCCTCAACAAGATCGAAACGCAGCTTAGCGATCTCTGCACTGGTTCTTCCCTTCCAACACTTTCCGATGATGGGGGTGTCTCTTCAGAAGAAGGTTTAAGTGCTGGAGATTGTGATCCCCAAGATGGGCAATTACGAGGTGAAGATCGAGAACTTAAGGATAGGCTTCTACGTAAGTTTGGAAGTCACATTGGTTCTTTGAAATTGGAATTTTCAAAGAAGAAAAAGAGGGGCAAGCTGCCGAAAGACGCTAGACAAACACTACTTCAGTGGTGGAATGTTCATTACAAATGGCCTTACCCTACGGAGGGTGATAAGATTGCACTGGCAAAATCAACTGGGTTAGACCAGAAGCAAATTAACAATTGGTTTATTAATCAAAGAAAGCGTCACTGGAAACCGTCTGAAAATATGCCGTTTACTATGGTGGATGGTCTGACCGGTCGTAGAATTTCAACTTTTTAT 960 0.4875 MEDEMYGVPSTAEYSDKALMTPENIFPAEYHSFLMSSGGRIPMFGSDELLSAAVTVTAEPYPNVTIAPEIQRHNDTSSFVKAKIASHPHYPRLLQAYIDCQKVGAPPEIACLLEEIRLENDVCKRDVVSTCVGADPELDEFMETYCDMLVKYKSDLTRPFDEATTFLNKIETQLSDLCTGSSLPTLSDDGGVSSEEGLSAGDCDPQDGQLRGEDRELKDRLLRKFGSHIGSLKLEFSKKKKRGKLPKDARQTLLQWWNVHYKWPYPTEGDKIALAKSTGLDQKQINNWFINQRKRHWKPSENMPFTMVDGLTGRRISTFY 320
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mupr12921g00001 320 Pfam ELK domain 216 237 IPR005539 GO:0003677
Mupr12921g00001 320 Pfam Homeobox KN domain 256 295 IPR008422 GO:0003677|GO:0006355
Mupr12921g00001 320 SUPERFAMILY Homeodomain-like 237 309 IPR009057 -
Mupr12921g00001 320 ProSiteProfiles 'Homeobox' domain profile. 236 299 IPR001356 GO:0003677
Mupr12921g00001 320 Pfam KNOX1 domain 80 120 IPR005540 GO:0003677|GO:0005634
Mupr12921g00001 320 SMART ELK_2 216 237 IPR005539 GO:0003677
Mupr12921g00001 320 ProSiteProfiles ELK domain profile. 216 236 IPR005539 GO:0003677
Mupr12921g00001 320 CDD homeodomain 248 300 IPR001356 GO:0003677
Mupr12921g00001 320 Pfam KNOX2 domain 131 178 IPR005541 GO:0003677|GO:0005634
Mupr12921g00001 320 SMART HOX_1 238 303 IPR001356 GO:0003677
Mupr12921g00001 320 ProSitePatterns 'Homeobox' domain signature. 274 297 IPR017970 GO:0000981|GO:0006355
Mupr12921g00001 320 SMART KNOX1_2 78 122 IPR005540 GO:0003677|GO:0005634
Mupr12921g00001 320 Gene3D - 235 305 - -
Mupr12921g00001 320 MobiDBLite consensus disorder prediction 189 211 - -
Mupr12921g00001 320 SMART KNOX2_2 128 179 IPR005541 GO:0003677|GO:0005634
Mupr12921g00001 320 FunFam Homeobox protein knotted-1-like 2 241 303 - -
Mupr12921g00001 320 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 82 306 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mupr12921g00001 Mupr-Chr12921 18519 28223 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12921g00001 3 313 Homeobox Transcription Factor Family AT1G23380 67.593 2.97e-145 410
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mupr12921g00001 KNOX2 3.8e-26 No_clan