Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12893g00002 ATGCACGAACATAGAGACCCTGCAATTCGCCTCTTCGGCCAGAAGATCCCTTTCCCTGAAGACGTTGACAAAGAAGAACAAGAGATACAAGAGGATGCTGGAGTTGAAAATGTTAGCGAGGAAGACAGAGAAGCTGATCCTCCTCCAAATGCTGAAGAGACTAAGAATTCAGGCGCATCCCTTGAGGCTATTGTGAACCCAAAAACACCTTCCATAAAAGAAGATGCTACAAAATCAAAAGGTGACAAGATTGAGAAGGAACAAAACGATGCATCCAACTCACAACAGAAAACCCTGAAGAAGCCAGATAAAGTGCTACCATGCCCCCGCTGCAAAAGCATGGACACCAAATTTTGTTACTACAACAACTACAATGTGAACCAGCCACGTTATTTCTGCAAAGCCTGTCAAAGATACTGGACTGCAGGAGGCACCATGAGGAATGTTCCCGTGGGGGCAGGACGGCGAAAGAACAAGAACACTGCCTCGCATTATGGCCACATCACTATCTCCGAGGCGCTTCAAGCAGCTAGAGTTGATGCTCCTAATGGAACTCATCTTCCAACTTTGAAGAGCAATGGTAGGGTTCTCAGCTTTGGATTAGATGCGCCTATTTGTGATTCCATGGCATCTGTCCTCAATCTTGGAGAGAAAAAAGCTCTTAATGGCACAAGAAATGGGTTTCATCACGGCTTTGAGGATCAAAGACTCGCCGTTCCTTGCAAAAGTTGGGAAAATGGTGATGACTGTTCAACTACATCTTCCATTACACTTTCATGTTCCATGGGAGAAAGTAGCAAAAGCACCTTCCAACAACAACCATTGCTCCAAAATCATGGTTTCCTTCCTCAACTTCCATGTATTCCTGGTGTTCCTTGGCCATACACATGGAATTCTCCAGTTCCCTCACCTGCTGTGTGTCCTTCAGCATTTCCCCTACCATTCTATCCTGCTACTTTTTGGAACTGTGGCATGCCAGGGAACTGGAATGTTCCTTGGTTTTCCTCACATTCATCTGTTTCAAACCCAAATTCTCCAACTTTGGGGAAGCACTCGAGGGACGGTCACATGATTAAGCAAGACTCTTTGCACAAAGAAGAAGCTTCAAAGCCGAGAAACGGGTGTGTTTTGGTTCCGAAAACGTTGAGAATTGATGATCCAAGTGAAGCTGCAAAGAGTTCTATATGGGCAACTCTAGGAATTAAGAACGAGTCAGCAAATGGAGGAGGCATGTTTAAGGCCTTTCAATCAAAGAAGGAGGAGAAGAATCATGTTGAAGCCTCTCCAGTGTTGATGGCTAACCCTGCAGCTTTGTCTAGATCCCTTAACTTTCATGAGAACTCCTAA 1347 0.4499 MHEHRDPAIRLFGQKIPFPEDVDKEEQEIQEDAGVENVSEEDREADPPPNAEETKNSGASLEAIVNPKTPSIKEDATKSKGDKIEKEQNDASNSQQKTLKKPDKVLPCPRCKSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNTASHYGHITISEALQAARVDAPNGTHLPTLKSNGRVLSFGLDAPICDSMASVLNLGEKKALNGTRNGFHHGFEDQRLAVPCKSWENGDDCSTTSSITLSCSMGESSKSTFQQQPLLQNHGFLPQLPCIPGVPWPYTWNSPVPSPAVCPSAFPLPFYPATFWNCGMPGNWNVPWFSSHSSVSNPNSPTLGKHSRDGHMIKQDSLHKEEASKPRNGCVLVPKTLRIDDPSEAAKSSIWATLGIKNESANGGGMFKAFQSKKEEKNHVEASPVLMANPAALSRSLNFHENS 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12893g00002 448 ProSitePatterns Zinc finger Dof-type signature. 108 144 IPR003851 GO:0003677|GO:0006355
Mupr12893g00002 448 ProSiteProfiles Zinc finger Dof-type profile. 106 160 IPR003851 GO:0003677|GO:0006355
Mupr12893g00002 448 MobiDBLite consensus disorder prediction 24 39 - -
Mupr12893g00002 448 Pfam Dof domain, zinc finger 103 160 IPR003851 GO:0003677|GO:0006355
Mupr12893g00002 448 MobiDBLite consensus disorder prediction 73 90 - -
Mupr12893g00002 448 MobiDBLite consensus disorder prediction 1 105 - -
Mupr12893g00002 448 PANTHER CYCLIC DOF FACTOR 2 1 448 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12893g00002 Mupr-Chr12893 1203 3839 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12893g00002 1 446 C2C2-Dof Transcription Factor Family AT3G47500 51.899 2.50e-131 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mupr12893g00002 zf-Dof 3.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12893g00002 - - gmx:778113 777.704