Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12883g00004 ATGCCGAAGAACAAGGGAAAGGGAGGTAAGAACAGGAAGAGGGGAAAGAACGAAGCTGATGACGAGAAGAGAGAGCTGGTGTTCAAGGAGGACGGGCAAGAGTATGCGCAGGTCCTCCGTATGCTCGGAAACGGTCGCTGTGAGGCCATGTGCATCGACGGCACGAAGCGCCTCTGTCACATCCGCGGCAAGATGCACAAGAAGGTCTGGATCGCCGCCGGCGATATCATCCTCGTCGGCCTCCGCGACTACCAGGACGACAAGGCTGACGTCATCCTCAAGTACATGCCCGACGAGGCTAGACTCCTCAAGGCCTACGGCGAGTTGCCTGACACCACTCGCCTCAACGAGGGCATCGGCGCCGGCTTGGACGAGGAGGACGACGCCACCGCCAACGACTACATCGAGGGAATGAGGGGACATGGCATGTATTTTGGCTGTATGGTTATCCGAGCTTGTCAAAATAATCCTTCAATGAGAGGTGTGAAGGGCATAAAACTATTTGTTGGAAATGGGTTCGAGTCAGTACCCAAGGTGGATTCTCCTTCAAATAATCAGGCAATGCTTCTAATTGCCTTCGTTTTCGACTCCATTGTCTTGTTCTTTTCTTCCTCGTCCATCAACTCTCTGCTATGCTCTAACGCGTACTACTCCAAACCCCTTAATCAAATCTGA 675 0.5289 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDTTRLNEGIGAGLDEEDDATANDYIEGMRGHGMYFGCMVIRACQNNPSMRGVKGIKLFVGNGFESVPKVDSPSNNQAMLLIAFVFDSIVLFFSSSSINSLLCSNAYYSKPLNQI 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12883g00004 224 CDD S1_IF1A 33 109 IPR001253 GO:0003743|GO:0006413
Mupr12883g00004 224 ProSitePatterns Eukaryotic initiation factor 1A signature. 41 63 IPR018104 GO:0003743|GO:0006413
Mupr12883g00004 224 ProSiteProfiles S1 domain IF1 type profile. 22 96 IPR006196 GO:0003723|GO:0003743|GO:0006413
Mupr12883g00004 224 Pfam Translation initiation factor 1A / IF-1 32 93 IPR006196 GO:0003723|GO:0003743|GO:0006413
Mupr12883g00004 224 Hamap Translation initiation factor 1A [eif1a]. 16 110 IPR001253 GO:0003743|GO:0006413
Mupr12883g00004 224 Gene3D - 2 138 IPR012340 -
Mupr12883g00004 224 FunFam Eukaryotic translation initiation factor 1A 2 140 - -
Mupr12883g00004 224 NCBIfam translation initiation factor eIF-1A 14 110 IPR001253 GO:0003743|GO:0006413
Mupr12883g00004 224 MobiDBLite consensus disorder prediction 1 25 - -
Mupr12883g00004 224 SUPERFAMILY Nucleic acid-binding proteins 2 133 IPR012340 -
Mupr12883g00004 224 PANTHER EIF-1A 1 129 IPR001253 GO:0003743|GO:0006413
Mupr12883g00004 224 SMART eIF1neu4 28 110 IPR001253 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12883g00004 Mupr-Chr12883 21782 23626 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12883g00004 1 136 Eukaryotic Initiation Factors Gene Family AT2G04520 88.235 2.58e-82 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12883g00004 K03236 - gmx:100780794 267.314