Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12872g00002 ATGAGTATGGTGTATGGTCATGCTATGGAGTACTCTCAAGGGAAGACAAGGATGAACCCAGAAATGGATTCAAATATTGGTCAACATTATCACCAACAAAATTCTGGATTAATGCGATACCGTTCTGCTCCAAGTTCATTGATCACAAGTCTTGTGAACAACAACAACAACATTGGTTGTGTCAATAGTGAAGCTTTGAGAAGTGACCATAATCATCATCATCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCATTATCCTCCCTCCACAAGTTCTGAAATGGAGAGCATGTTAGCCAAGTTGATTTCTTCCACCAATTGTGAGCTATTGCAAGTGAAGGAAGAAGCAGGGGACTCTGTTTCACAGGCATCACAACAACACAATGGTTACTCTTATGGCTCTTCACCTCAGATAATGTACCAATCTCAGCAAATTCAAGACTTGCCTATGCCAAATGCCTCTTTTGATGGCTCATTCAGTGCAGTGAATTCCACACAAACTAAAATTGCTGCTTCCAACAATTATTCCAATCTCATTAGGCAAAAGAGTTCCCCTGCTGGCTTTTTCTCCAATTACTCACATGATAATGAATCTAAACATTTTGTATTGATAGCAAATCTTGCAGCATTGAGAGATGTGGCAAGTTTTAGGGGATGTGATGTATCAAATGGACAAGCTATTACATCCACTAGTGGGTTGCATGGTACTTTGAACATGTCATCTAGGCCATCCTCTTGCTCCACCAGGATGCCACAGATTGCTGAAAATGGAAATGAAGGTGTGGAAGCAACTTGTGTTGAAAGTAGAAACCTCAGAAATTACAATAGCAGCACTAAAAGTTACATGCCTAGTTTCACCACTGACTTGTGGGATGATTCGGCATTCAGTGCCTCCAAAACAGCTAGCAACAGTGGTGAAATCTCATTTTCCACTTCAAATGATATGGATATTCAGGATGAAGATTTTGGATATCAAAAAGTTGGTTTGACCCACCATTTGAGTCTGCCTGGCTCTTCTAGTAGGATGACTACCATGGAGAAGTTTTATCAAATTCAAGGATCTGTTCCATGCAAAATTCGTGCCAAGAGAGGTTTTGCCACTCACCCTCGAAGCATTGCAGAGAGGGAAAGAAGAACACGAATTAGCGCAAGAATCAAGAAATTGCAAGACCTTTTCCCAAAATCAGACAAGCAAACAAGCACAGCAGATATGTTGGATTTGGCAGTTGAGTACATTAAAGACCTGCAGAAACAAGTTAAGATCCTCACAGATACTAGAGCAAAGTGCACCTGTACAAGTAATCAGAAGCAATATTCTAGACCTAGTGCCTGA 1332 0.4122 MSMVYGHAMEYSQGKTRMNPEMDSNIGQHYHQQNSGLMRYRSAPSSLITSLVNNNNNIGCVNSEALRSDHNHHHHQQQQQQQQQHYPPSTSSEMESMLAKLISSTNCELLQVKEEAGDSVSQASQQHNGYSYGSSPQIMYQSQQIQDLPMPNASFDGSFSAVNSTQTKIAASNNYSNLIRQKSSPAGFFSNYSHDNESKHFVLIANLAALRDVASFRGCDVSNGQAITSTSGLHGTLNMSSRPSSCSTRMPQIAENGNEGVEATCVESRNLRNYNSSTKSYMPSFTTDLWDDSAFSASKTASNSGEISFSTSNDMDIQDEDFGYQKVGLTHHLSLPGSSSRMTTMEKFYQIQGSVPCKIRAKRGFATHPRSIAERERRTRISARIKKLQDLFPKSDKQTSTADMLDLAVEYIKDLQKQVKILTDTRAKCTCTSNQKQYSRPSA 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12872g00002 443 CDD bHLH_AtbHLH_like 370 422 IPR045239 -
Mupr12872g00002 443 Gene3D - 367 438 IPR036638 GO:0046983
Mupr12872g00002 443 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 368 428 IPR036638 GO:0046983
Mupr12872g00002 443 MobiDBLite consensus disorder prediction 68 96 - -
Mupr12872g00002 443 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 45 435 - -
Mupr12872g00002 443 MobiDBLite consensus disorder prediction 77 96 - -
Mupr12872g00002 443 SMART finulus 371 421 IPR011598 GO:0046983
Mupr12872g00002 443 FunFam Transcription factor bHLH130 family 366 435 - -
Mupr12872g00002 443 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 365 415 IPR011598 GO:0046983
Mupr12872g00002 443 Pfam Helix-loop-helix DNA-binding domain 371 416 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12872g00002 Mupr-Chr12872 7557 11726 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12872g00002 22 421 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 34.300 1.93e-44 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mupr12872g00002 HLH 1.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12872g00002 - - gmx:100795896 682.559