Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12868g00001 ATGTCACAACAAACGCTAACACTACCACTACCCATTCTTCTATTCACACTCTTTACATTTTCACCAGCCACGTCTCGTTACTCTTCACCGTCACCCCCCGCCGCGCCATTTTCCGAAACTACCCCCGAATCTCCTCCACGCGCCGAATGGCTGTCCGCCTACGCCACCCACTACGCCGCCAGCGAGGCGGCGGACGGCGCGTGCGGCTACGGAGACCTCCTCGAGGGCGGTTACGGCACTGCCGCCGCCGCCCTCAGCGAAGCCCTCTTCGGACGCGGCCAGATCTGCGGCGCCTGCTTCGAGCTCCGCTGCCGCGAGGAGGACTCCGCCTTCGACCGACGATGGTGCATCCCCGGCACGTCCGTGGCCGTCACCGCCACGAATTTCTGCGCCCCGAATTACGGGTCAGACGCGGAGAGCTTGGGCGGACATTGTAACCCTCCGAAGCAACACTTCATTGTCCCCACTGAGGCATTCGAGAAAATCGCAATCTGGAAGGCTGGCACCGGCAACATGCCCGTGGAGTATCGCAGGATAAAGTGTAGAAGGGAAGGGGGGATGCGGTTTACAATTACTGGTTCCGGAATCTTCATTTCGGTACTGATTAGTAATGTGGCTGGCACTGGAGACATTGTTGCTGTGAAGGTTAAGGGTTCAAGAACTGGTTGGCTTTCCATGGGTAGGAATTGGGGCCAGAATTGGCATGTTAATGCGTTACTCCAGAACCAACCTCTTTCTTTTGAGGTTACGGCTAGTGATGGGGTAACTCTTACATCTTACAATGTTGCTCCCAAGGATTGGACCTTTGGACAATCTTTTGAAGCCAAGCAATTTGAGTCTTGA 843 0.5587 MSQQTLTLPLPILLFTLFTFSPATSRYSSPSPPAAPFSETTPESPPRAEWLSAYATHYAASEAADGACGYGDLLEGGYGTAAAALSEALFGRGQICGACFELRCREEDSAFDRRWCIPGTSVAVTATNFCAPNYGSDAESLGGHCNPPKQHFIVPTEAFEKIAIWKAGTGNMPVEYRRIKCRREGGMRFTITGSGIFISVLISNVAGTGDIVAVKVKGSRTGWLSMGRNWGQNWHVNALLQNQPLSFEVTASDGVTLTSYNVAPKDWTFGQSFEAKQFES 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12868g00001 280 PRINTS Expansin/Lol pI family signature 261 275 IPR007118 GO:0005576
Mupr12868g00001 280 PRINTS Expansin/Lol pI family signature 49 64 IPR007118 GO:0005576
Mupr12868g00001 280 PRINTS Expansin/Lol pI family signature 169 185 IPR007118 GO:0005576
Mupr12868g00001 280 PRINTS Expansin/Lol pI family signature 223 237 IPR007118 GO:0005576
Mupr12868g00001 280 SUPERFAMILY PHL pollen allergen 183 274 IPR036749 -
Mupr12868g00001 280 PRINTS Expansin signature 77 91 IPR002963 GO:0009664
Mupr12868g00001 280 PRINTS Expansin signature 185 197 IPR002963 GO:0009664
Mupr12868g00001 280 PRINTS Expansin signature 261 277 IPR002963 GO:0009664
Mupr12868g00001 280 PRINTS Expansin signature 232 253 IPR002963 GO:0009664
Mupr12868g00001 280 PRINTS Expansin signature 197 218 IPR002963 GO:0009664
Mupr12868g00001 280 PRINTS Expansin signature 142 159 IPR002963 GO:0009664
Mupr12868g00001 280 SMART dpbb_1 82 176 IPR007112 -
Mupr12868g00001 280 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 196 275 IPR007117 -
Mupr12868g00001 280 Gene3D - 37 182 IPR036908 -
Mupr12868g00001 280 Pfam Expansin C-terminal domain 187 264 IPR007117 -
Mupr12868g00001 280 SUPERFAMILY Barwin-like endoglucanases 49 204 IPR036908 -
Mupr12868g00001 280 CDD DPBB_EXPA_N 49 181 - -
Mupr12868g00001 280 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 65 186 IPR007112 -
Mupr12868g00001 280 Gene3D - 187 278 IPR036749 -
Mupr12868g00001 280 PANTHER EXPANSIN-A15 24 278 IPR002963 GO:0009664
Mupr12868g00001 280 Pfam Lytic transglycolase 83 176 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12868g00001 Mupr-Chr12868 14036 16397 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12868g00001 49 280 Expansin Gene Family AT3G03220 70.213 2.93e-121 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12868g00001 - - gmx:100790211 451.825