Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12842g00003 ATGGCCGTGACTCTGACGCCTGGGGCGATAACGGCGATGTGCAGTGGCAATTGCTCCGAGGAGTTGAAGCCGGTGGTGCAAGTTCTGGACTTGAAACTGGTGCAGTCTCAACAACACAGCAACACCGAGAGGTACCGTTTGGTTCTCTCCGATGGTTCCCATCACCAGCAAGGGATGCTCGCCACGCAGAGGAACGAGTTGGTTCATTCGGGAAGGTTGCAGAAAGGATCCATTGTTAGACTCACTCAGTTCATCTGCAACGTTATTCAGGGTCGCAAGATTATTATCATTGTTGACATGGACGTTGTATTGGACAAATGTGAGATGATTGGAGAACCTGTTGCAGCACCAAAAGGTGCACCTGCAGAATCTGCTCCTGGTCAATCAGGAGTCACCTCTGGGAATACACAATCTTTAAATAGCAGTTCACATGCAGGTGGCATGACTGCTAGACCAAATATGCCTGGGCCATCTCTGGATCATCCAAAAGTGACTCCTCCTGCCAGTAGTGTTTATTCTAGTAATTCTGACTCTGTACGATATGGTACATCTAATGCCCCTCCCATTTATCCTAAAGTAGAGCCTGGAGTCAGTTTGCCTAGATCAGCACCATTCAGTGGGTCTTATGGTGATCAGAACACAGGTTTCCGCAGTCCCCAATCTGAGGCTTCAAGGCCCTTGCAAAACTCTTATGCTCGTCCACCTCAGCCTATGTACCGGCAGCCATCTCCTATGTACACTAACAGGGGGCCAATTGGAAGAAATGAAGCTCCCCCCAGGATAATTCCAATAGCAGCACTGAATCCGTACCAGAATATGTGGACAATTAAAGCCAGAGTAACAGCTAAGGGAGAACTCAGGCACTATAACAATGCCCGAGGTGATGGGAAGGTATTTTCTTTTGATCTTCTGGATTCTGATGGTGGAGAAATTCGGGCGACTTGCTTCAATACTGTGGCTGATCAGTTTTATAATTTAATTGAAGCTGGTAAAGTATATCTAGTTTCCAGGGGAAGCATAAAGCCAGCTCAGAAGAATTTTAATCACCTTCGCAATGATCAAGAGCTAACCCTTGATATGACATCAACTATACAGCCTTGCCTTGATGATGATAACTCAATTCCAAAGCAGACATTTAATTTTCGTCCCATTAGTGAAATTGAAAGTGTGGAAAACAATAGCATCGTGGATTTGATTGGTGTGGTGTCTTCTATTAGTCCTACAGGTTCAATCATGAGAAAAAATGGCACTGAAACTCAGAAGAGAACTCTCCAGTTGAAAGACATGTCTGGCCGAAGTGTTGAGTTAACTTTATGGGGAAATTTTTGCAATGTAGAAGGACAAAAGCTGCAAAGTATTTGTGATTCTGGGGCATTTCCAGTTTTGGCTACAAAAGCTGTCAGAGTAAATGATTTCAATGGGAAGTCTGTTGGGACTATAGCCACTAGCCAGCTATTTGTAGAGCCTGATTTTCCTGAGGCTTATACACTGAAAAGATGGTCTGAAAATGAAGGGAAGAATGTCGCAACTCTCTCTATTTCCAGGGAAACATCTAATTTTGGTAAGACTGATGTGCGGAAGACTATTTCTCAAATTAAAGATGAGAAGTTAGGGACTTCAGAGAAGCCTGATTGGGTATCAGTCTGTGCAACTCTTTCTTTTATTAAGGTTGATAACTTCTGTTACCCAGGATGCCCTATCATGATCGGGGATAGGCAATGTAACAAAAAGGTGACCAATAATGGAGATGGGAAATGGCATTGTGACAGGTGTAATCAGTCTATTGACACTTGTGATTATAGGTACATACTGTCATTCCAGATACAGGATCACACTGGCGTAACATGGGTTACTGCTTTCCAGGAGAGTGGTGAGGAGATCATGGGTATACCTGCGAAAGATTTGTATTATCTGAAGTATGAAGAGCAAGATGATGAAAAATTTGCTGAAATCATCCACAAGGTTCTCTTCACCAAGTTTGTGTTCAAGTTAAGAATAAAGGAGGAGACATTTAGCGATGAACAACGTATTAAGTCAACGGTAGTAAAAGCAGATAAGGTAAACTTTGCATCTGAATTTAGAGTTGTTTTGGATTTGATTGATAAACTCAAGAATGAGAAATCAGAGGGTACCACCGTTCCAAACTCTGTAACCAACAATACTGGACTAGGCAGCGTTGAAACTGGACGAGTTATGCCACTGGCTTATAATCCTATAAAGAGCAACGTTGATACCAGTAGAGATTATGGGATGCCAGCAAATCAAGTGGGTCAGTATGGAAACCAATATAGTAATTTTGCTTCAGGAGGTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGGTTCATATATGTCGTGTACCAACTGTGGAGGCTCTGGTCATAGCTCTGTACTTTGCCCAAATATTAGAAATCTAGCCGGACAGTCTGCGGGAGGGAGCTTTGGCAATAGGGCATCTGGTGCAGGATCAGGTGGTGGTGCTTCTGGCGAATGCTTTAAATGCCATCAACCTGGCCACTGGGCAAGAGACTGTCCTGGTTACAGTGCAGCTCCTCCAGCATATGGAGGCACTAATGTAATGCAAGGGAGATATGGGATTGCTCAAAACCAATTTGGAGGATATTGA 2625 0.4389 MAVTLTPGAITAMCSGNCSEELKPVVQVLDLKLVQSQQHSNTERYRLVLSDGSHHQQGMLATQRNELVHSGRLQKGSIVRLTQFICNVIQGRKIIIIVDMDVVLDKCEMIGEPVAAPKGAPAESAPGQSGVTSGNTQSLNSSSHAGGMTARPNMPGPSLDHPKVTPPASSVYSSNSDSVRYGTSNAPPIYPKVEPGVSLPRSAPFSGSYGDQNTGFRSPQSEASRPLQNSYARPPQPMYRQPSPMYTNRGPIGRNEAPPRIIPIAALNPYQNMWTIKARVTAKGELRHYNNARGDGKVFSFDLLDSDGGEIRATCFNTVADQFYNLIEAGKVYLVSRGSIKPAQKNFNHLRNDQELTLDMTSTIQPCLDDDNSIPKQTFNFRPISEIESVENNSIVDLIGVVSSISPTGSIMRKNGTETQKRTLQLKDMSGRSVELTLWGNFCNVEGQKLQSICDSGAFPVLATKAVRVNDFNGKSVGTIATSQLFVEPDFPEAYTLKRWSENEGKNVATLSISRETSNFGKTDVRKTISQIKDEKLGTSEKPDWVSVCATLSFIKVDNFCYPGCPIMIGDRQCNKKVTNNGDGKWHCDRCNQSIDTCDYRYILSFQIQDHTGVTWVTAFQESGEEIMGIPAKDLYYLKYEEQDDEKFAEIIHKVLFTKFVFKLRIKEETFSDEQRIKSTVVKADKVNFASEFRVVLDLIDKLKNEKSEGTTVPNSVTNNTGLGSVETGRVMPLAYNPIKSNVDTSRDYGMPANQVGQYGNQYSNFASGGAPAPAPAPAPGSYMSCTNCGGSGHSSVLCPNIRNLAGQSAGGSFGNRASGAGSGGGASGECFKCHQPGHWARDCPGYSAAPPAYGGTNVMQGRYGIAQNQFGGY 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12842g00003 874 ProSiteProfiles Zinc finger CCHC-type profile. 831 845 IPR001878 GO:0003676|GO:0008270
Mupr12842g00003 874 Pfam Replication protein A OB domain 384 487 IPR031657 -
Mupr12842g00003 874 Pfam OB-fold nucleic acid binding domain 274 355 IPR004365 GO:0003676
Mupr12842g00003 874 MobiDBLite consensus disorder prediction 205 236 - -
Mupr12842g00003 874 PANTHER REPLICATION FACTOR A 1, RFA1 274 695 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mupr12842g00003 874 CDD RPA1_DBD_B 395 500 - -
Mupr12842g00003 874 SUPERFAMILY Retrovirus zinc finger-like domains 817 849 IPR036875 GO:0003676|GO:0008270
Mupr12842g00003 874 NCBIfam replication factor-a protein 1 (rpa1) 236 702 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mupr12842g00003 874 CDD RPA1N 8 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Mupr12842g00003 874 Pfam Replication factor-A C terminal domain 545 693 IPR013955 -
Mupr12842g00003 874 MobiDBLite consensus disorder prediction 116 257 - -
Mupr12842g00003 874 Pfam Zinc knuckle 830 845 IPR001878 GO:0003676|GO:0008270
Mupr12842g00003 874 FunFam Replication protein A subunit 4 117 - -
Mupr12842g00003 874 FunFam Replication protein A subunit 260 370 - -
Mupr12842g00003 874 Gene3D - 260 370 IPR012340 -
Mupr12842g00003 874 Gene3D - 4 116 IPR012340 -
Mupr12842g00003 874 SMART c2hcfinal6 785 801 IPR001878 GO:0003676|GO:0008270
Mupr12842g00003 874 SMART c2hcfinal6 830 846 IPR001878 GO:0003676|GO:0008270
Mupr12842g00003 874 Pfam Replication factor-A protein 1, N-terminal domain 5 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Mupr12842g00003 874 SUPERFAMILY Nucleic acid-binding proteins 260 374 IPR012340 -
Mupr12842g00003 874 CDD RPA1_DBD_A 263 366 - -
Mupr12842g00003 874 MobiDBLite consensus disorder prediction 167 183 - -
Mupr12842g00003 874 SUPERFAMILY Nucleic acid-binding proteins 1 111 IPR012340 -
Mupr12842g00003 874 Gene3D - 372 511 IPR012340 -
Mupr12842g00003 874 Gene3D - 783 850 - -
Mupr12842g00003 874 SUPERFAMILY Nucleic acid-binding proteins 379 508 IPR012340 -
Mupr12842g00003 874 MobiDBLite consensus disorder prediction 126 148 - -
Mupr12842g00003 874 FunFam Replication protein A subunit 512 703 - -
Mupr12842g00003 874 Gene3D - 512 703 IPR012340 -
Mupr12842g00003 874 SUPERFAMILY Nucleic acid-binding proteins 526 703 IPR012340 -
Mupr12842g00003 874 CDD RPA1_DBD_C 529 702 IPR047192 -
Mupr12842g00003 874 FunFam Replication protein A subunit 373 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12842g00003 Mupr-Chr12842 13396 16877 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12842g00003 1 821 Core DNA Replication Machinery Family AT5G45400 50.855 0.0 862
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12842g00003 K07466 - gmx:100778597 1358.2