Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1280g00001 GTGATGGTTGATTCAAATGGTCATAGCAAGGGCTCTGGTTTTGTTGCTTTCTGTACTCCCGAAGAAGCAACTAAAGCGTTAAATGAAATGAATGGAAAGATGATTGGAGGAAAGCCTCTATATGTTGCTGTGGCCCAGCGCAAAGAAGAGAGGAAGGCTCGTTTGCAGTTTTCTCAAATGCAAGTGTCCGGTGCAATTACATCTTTGCCTGCGGGCATTCCTGGATATCATCCAGTGGCACCAAGACTTACTCCTCAGCAGTTGTATTTTGGTCAAGGAACACCTGGTCTGGTACCACCTCAGCCAAGTGGATACGGTTTTCAGCAGCCACTTTTGCCAGGCATGCGTCCTGGTGTTGCTCCAAATTTCATTATGCCATGTCACCTTCAGAGACAGGGTCCGCCTGGACAAAGGATGGGTGCTCGGAGAGTCGGAAACCTCCAACAAGTGCAGCAGAATCAAATAATGGTACATCGCAACACCAACCAAGGATTTAGATATATGAGAAACAACAGTCGAAATGGCATGGATCCTTCGGTAGTTCCCCAAGGTCTAGTGGGTCCAATGATGCCACTGCCCTTTGATGGTTCAGGAATTTCTGCAGCTCCTGTTGATAACTCGCCTGTCGTGCCATTGTCGAACACCCTTGCTTCGGCTTTGGCCTCTGCTACTCCAGAAAATCAGCGTCTGATGCTAGGTGAACACCTATATCCACTTGTTGATCGACTTACGCCTAATCATCAGACAGCAAAGGTTACAGGAATGTTACTAGAAATGGACCAGTCGGAGGTCATTCATCTGATCGAGTCTCCCGCGGACTTAAAGATAAAGGTGTCCGAGGCAATGCAAGTCCTTCGTGAAGCTGCATCAGGTTCCGAAGTTGGTCATCAGCTTGACTCATTGTCTTTAAATGAGTGA 918 0.4749 VMVDSNGHSKGSGFVAFCTPEEATKALNEMNGKMIGGKPLYVAVAQRKEERKARLQFSQMQVSGAITSLPAGIPGYHPVAPRLTPQQLYFGQGTPGLVPPQPSGYGFQQPLLPGMRPGVAPNFIMPCHLQRQGPPGQRMGARRVGNLQQVQQNQIMVHRNTNQGFRYMRNNSRNGMDPSVVPQGLVGPMMPLPFDGSGISAAPVDNSPVVPLSNTLASALASATPENQRLMLGEHLYPLVDRLTPNHQTAKVTGMLLEMDQSEVIHLIESPADLKIKVSEAMQVLREAASGSEVGHQLDSLSLNE 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1280g00001 305 SMART poly_2 224 288 IPR002004 GO:0003723
Mupr1280g00001 305 SUPERFAMILY RNA-binding domain, RBD 1 58 IPR035979 GO:0003676
Mupr1280g00001 305 PANTHER BOULE-RELATED 1 217 - -
Mupr1280g00001 305 SUPERFAMILY PABC (PABP) domain 152 290 IPR036053 GO:0003723
Mupr1280g00001 305 FunFam Polyadenylate-binding protein 209 291 - -
Mupr1280g00001 305 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 212 290 IPR002004 GO:0003723
Mupr1280g00001 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1 40 IPR000504 GO:0003723
Mupr1280g00001 305 Gene3D - 1 64 IPR012677 -
Mupr1280g00001 305 Gene3D - 210 290 - -
Mupr1280g00001 305 Pfam Poly-adenylate binding protein, unique domain 220 285 IPR002004 GO:0003723
Mupr1280g00001 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 47 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1280g00001 Mupr-Chr1280 123 1675 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1280g00001 1 63 Eukaryotic Initiation Factors Gene Family AT1G22760 41.538 2.20e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1280g00001 K13126 - gmx:100783163 456.062