Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12786g00001 ATGGTGGTAAACGAGAGACCCGCTAAACGGATCAAGAGGAGGGTCACAGCTGATCTCTATGATTTTCTCACTTTTCCGGCGGCCGGCGACGCCTCTTCTGGTGAACCCTTTCGAAACTGTGTTCAGCGCTTCCTCTCGGACCACGCGCGCATCAATTTCCCTCCTTCGCTCTTTCCGTCCCTTATGACGTGGCAGATCTTGTTCCGTGTTGGAGACCTCGACCACGGGCCCGATCTCTCGCCGCCCATGGTCGCTCTCGACATTGTCGAGGAGGACGTCACTCGTTCTCGTACTTCTGTCTACTGTGACCAGTGCCGAGTCGTTGGGTGGAGCGGGCATCCGGTGTGTCGAAAGCGGTACCATTTCATAATAAGGGCTGCAAGTAGCGCCATAGAAGCTTATCAAAGACCTTGTTCAAGATGTGGAAATCATCTCCAATTATCTGAAACTAGGTGTAGATCGTGTAACTTTGCCATCTCCGTTGATGACCTTGAGGACTGGGTGTATCATCAGATTGAAGATAACACCCATCTTCTGCATGGTGTTGTCCATGCCAATGGATATGGTCACCTGCTTACTCTTAACGGAAGAGAAGGTGGCTCGAAGCTTCTCTCTGGATCTGATATCATGGATTTCTGGGATAGGCTATGTGCGGCAATTTCTGTTAGGAAGGTTAGTGTGATGGATTTGTCCAAGAAATTTGGGCTGGAATACCGATTGCTTCATGCAGTCACCAAGGGACATTCCTGGTATGGCAATTGGGGTTATGAATTTGGAACTGGAAGCTATGCTCTTACCCAAGATGCCTACAAGAATGCAGTGAATACCCTTTCAAGCATGCCTTTGTCCTCATTTTTATTCAATGGTCGGGGACCACGTAACCGCCTGCAGTGTGTCATTTCTCTTTACCAGTCTTTGGCGGAAAAAGAACTTGTAACGATTGAAGATCTCTTCTCCTTTTTGTTGACATTGATTCATGAATGTCGTAAGCCAATGACCTTGACGACATCTAAGCAGCAAGAACTCACTTGCACCAGTAAATTATTGTGTGCTTGGACTGGAAATGATGTTGAAGAGGTGCAACGTGCTTTGGTCAAGGTATTGTTAGCATCATGTGCCTTTACGGATGCCAAATGGGTGACAAGGCGTGCTCTCAAGGGTGCAGTATGCAGGGGTGTTTCATCTCCAGAGCTTCTAGACTACTGTCTTAAGCTCTTGCCAGGGAAATTAGCTGCCAATGGAATGGTAGTTTGTTCGCGATGCAATCCCATTTCCAGTGCCATCGAGTTCAGGTTGGAATCTTTGAGAAATGGATTTAGGGCAAATTCAAGTTATCCATTGGAAGAGCAAGTGATATCTGATTTGACATTCTTATTTGATTCAATTATTGACCCTGACAAAATGGCGTGCTACAGACCTAAAATTATGAGGAAAAGAGTGGCTGATTCAGCCAGGAAGCTCCTTGATTGTAAGCAGTTTATGAAGGATTACAAGCCATATGAAATTGCCGTTGAAATGCCTTCTGTCATTAGGCTGTGGTGTCATGTGGAGCTTGCAGATCAGCCTAAGGATGATCCATCCCCACCACCAGAGCTAATTGTGTTATCTTTGAATGCTACCGTTGCTGATCTCAAGAGCGAAGCCACTAGTGCTTTTCAAGAGGTGTATGCAATGTATAAGAGGTTTCAAGCTGAGGAACTCCTAGGATATGGGTCAATCAGTGATTCGCTCACCATAAAGTTCTTGATTGGAACAAGTGGATCAATCCAAATTCAAGGTAAATGCCCAGCCAAACATGGGTTAAGCCGATTCCGAATGGAACGAGGTACAGAGGTGTGGAAGGTTGATTGCACTTGTGGGGCTAAGGATGATGATGGAGAGAAAATGTTAGCATGTGATACCTGTGGCGTTTGGCAGCATACCAGATGTGCTGGAATTAATAATTCTGATGGCATGCCATCTAAGTTTGTGTGTATGAGATGTGTCAACTCTTACCGTGAGGATACTAAAAAATTACCATCGTACGGTGAGGAAGCTAACAAGACTTGTAAATTCAACACATCTTGCAGAGATGAGGCAGTAGCAAGGGACTGTGCAACAGTTTCATGTAACATAGCTGTGAATTTTGGTAGCTTAGGCCCTATAGGCTGTATAGCTCGATTGTATCGAGCTCAA 2175 0.4566 MVVNERPAKRIKRRVTADLYDFLTFPAAGDASSGEPFRNCVQRFLSDHARINFPPSLFPSLMTWQILFRVGDLDHGPDLSPPMVALDIVEEDVTRSRTSVYCDQCRVVGWSGHPVCRKRYHFIIRAASSAIEAYQRPCSRCGNHLQLSETRCRSCNFAISVDDLEDWVYHQIEDNTHLLHGVVHANGYGHLLTLNGREGGSKLLSGSDIMDFWDRLCAAISVRKVSVMDLSKKFGLEYRLLHAVTKGHSWYGNWGYEFGTGSYALTQDAYKNAVNTLSSMPLSSFLFNGRGPRNRLQCVISLYQSLAEKELVTIEDLFSFLLTLIHECRKPMTLTTSKQQELTCTSKLLCAWTGNDVEEVQRALVKVLLASCAFTDAKWVTRRALKGAVCRGVSSPELLDYCLKLLPGKLAANGMVVCSRCNPISSAIEFRLESLRNGFRANSSYPLEEQVISDLTFLFDSIIDPDKMACYRPKIMRKRVADSARKLLDCKQFMKDYKPYEIAVEMPSVIRLWCHVELADQPKDDPSPPPELIVLSLNATVADLKSEATSAFQEVYAMYKRFQAEELLGYGSISDSLTIKFLIGTSGSIQIQGKCPAKHGLSRFRMERGTEVWKVDCTCGAKDDDGEKMLACDTCGVWQHTRCAGINNSDGMPSKFVCMRCVNSYREDTKKLPSYGEEANKTCKFNTSCRDEAVARDCATVSCNIAVNFGSLGPIGCIARLYRAQ 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12786g00001 725 Pfam PHD-finger 617 663 IPR019787 -
Mupr12786g00001 725 SUPERFAMILY FYVE/PHD zinc finger 606 664 IPR011011 -
Mupr12786g00001 725 CDD PHD_MMD1_like 616 661 - -
Mupr12786g00001 725 ProSitePatterns Uncharacterized protein family UPF0054 signature. 180 190 IPR020549 -
Mupr12786g00001 725 SMART PHD_3 616 662 IPR001965 -
Mupr12786g00001 725 ProSitePatterns Zinc finger PHD-type signature. 617 661 IPR019786 -
Mupr12786g00001 725 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 13 673 - -
Mupr12786g00001 725 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 602 668 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12786g00001 Mupr-Chr12786 9364 12798 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12786g00001 80 661 PHD Transcription Factor Family AT5G22260 27.896 2.27e-86 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mupr12786g00001 PHD 1.8e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12786g00001 K26271 - gmx:100780558 1278.08