LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr12786g00001	ATGGTGGTAAACGAGAGACCCGCTAAACGGATCAAGAGGAGGGTCACAGCTGATCTCTATGATTTTCTCACTTTTCCGGCGGCCGGCGACGCCTCTTCTGGTGAACCCTTTCGAAACTGTGTTCAGCGCTTCCTCTCGGACCACGCGCGCATCAATTTCCCTCCTTCGCTCTTTCCGTCCCTTATGACGTGGCAGATCTTGTTCCGTGTTGGAGACCTCGACCACGGGCCCGATCTCTCGCCGCCCATGGTCGCTCTCGACATTGTCGAGGAGGACGTCACTCGTTCTCGTACTTCTGTCTACTGTGACCAGTGCCGAGTCGTTGGGTGGAGCGGGCATCCGGTGTGTCGAAAGCGGTACCATTTCATAATAAGGGCTGCAAGTAGCGCCATAGAAGCTTATCAAAGACCTTGTTCAAGATGTGGAAATCATCTCCAATTATCTGAAACTAGGTGTAGATCGTGTAACTTTGCCATCTCCGTTGATGACCTTGAGGACTGGGTGTATCATCAGATTGAAGATAACACCCATCTTCTGCATGGTGTTGTCCATGCCAATGGATATGGTCACCTGCTTACTCTTAACGGAAGAGAAGGTGGCTCGAAGCTTCTCTCTGGATCTGATATCATGGATTTCTGGGATAGGCTATGTGCGGCAATTTCTGTTAGGAAGGTTAGTGTGATGGATTTGTCCAAGAAATTTGGGCTGGAATACCGATTGCTTCATGCAGTCACCAAGGGACATTCCTGGTATGGCAATTGGGGTTATGAATTTGGAACTGGAAGCTATGCTCTTACCCAAGATGCCTACAAGAATGCAGTGAATACCCTTTCAAGCATGCCTTTGTCCTCATTTTTATTCAATGGTCGGGGACCACGTAACCGCCTGCAGTGTGTCATTTCTCTTTACCAGTCTTTGGCGGAAAAAGAACTTGTAACGATTGAAGATCTCTTCTCCTTTTTGTTGACATTGATTCATGAATGTCGTAAGCCAATGACCTTGACGACATCTAAGCAGCAAGAACTCACTTGCACCAGTAAATTATTGTGTGCTTGGACTGGAAATGATGTTGAAGAGGTGCAACGTGCTTTGGTCAAGGTATTGTTAGCATCATGTGCCTTTACGGATGCCAAATGGGTGACAAGGCGTGCTCTCAAGGGTGCAGTATGCAGGGGTGTTTCATCTCCAGAGCTTCTAGACTACTGTCTTAAGCTCTTGCCAGGGAAATTAGCTGCCAATGGAATGGTAGTTTGTTCGCGATGCAATCCCATTTCCAGTGCCATCGAGTTCAGGTTGGAATCTTTGAGAAATGGATTTAGGGCAAATTCAAGTTATCCATTGGAAGAGCAAGTGATATCTGATTTGACATTCTTATTTGATTCAATTATTGACCCTGACAAAATGGCGTGCTACAGACCTAAAATTATGAGGAAAAGAGTGGCTGATTCAGCCAGGAAGCTCCTTGATTGTAAGCAGTTTATGAAGGATTACAAGCCATATGAAATTGCCGTTGAAATGCCTTCTGTCATTAGGCTGTGGTGTCATGTGGAGCTTGCAGATCAGCCTAAGGATGATCCATCCCCACCACCAGAGCTAATTGTGTTATCTTTGAATGCTACCGTTGCTGATCTCAAGAGCGAAGCCACTAGTGCTTTTCAAGAGGTGTATGCAATGTATAAGAGGTTTCAAGCTGAGGAACTCCTAGGATATGGGTCAATCAGTGATTCGCTCACCATAAAGTTCTTGATTGGAACAAGTGGATCAATCCAAATTCAAGGTAAATGCCCAGCCAAACATGGGTTAAGCCGATTCCGAATGGAACGAGGTACAGAGGTGTGGAAGGTTGATTGCACTTGTGGGGCTAAGGATGATGATGGAGAGAAAATGTTAGCATGTGATACCTGTGGCGTTTGGCAGCATACCAGATGTGCTGGAATTAATAATTCTGATGGCATGCCATCTAAGTTTGTGTGTATGAGATGTGTCAACTCTTACCGTGAGGATACTAAAAAATTACCATCGTACGGTGAGGAAGCTAACAAGACTTGTAAATTCAACACATCTTGCAGAGATGAGGCAGTAGCAAGGGACTGTGCAACAGTTTCATGTAACATAGCTGTGAATTTTGGTAGCTTAGGCCCTATAGGCTGTATAGCTCGATTGTATCGAGCTCAA	2175	0.4566	MVVNERPAKRIKRRVTADLYDFLTFPAAGDASSGEPFRNCVQRFLSDHARINFPPSLFPSLMTWQILFRVGDLDHGPDLSPPMVALDIVEEDVTRSRTSVYCDQCRVVGWSGHPVCRKRYHFIIRAASSAIEAYQRPCSRCGNHLQLSETRCRSCNFAISVDDLEDWVYHQIEDNTHLLHGVVHANGYGHLLTLNGREGGSKLLSGSDIMDFWDRLCAAISVRKVSVMDLSKKFGLEYRLLHAVTKGHSWYGNWGYEFGTGSYALTQDAYKNAVNTLSSMPLSSFLFNGRGPRNRLQCVISLYQSLAEKELVTIEDLFSFLLTLIHECRKPMTLTTSKQQELTCTSKLLCAWTGNDVEEVQRALVKVLLASCAFTDAKWVTRRALKGAVCRGVSSPELLDYCLKLLPGKLAANGMVVCSRCNPISSAIEFRLESLRNGFRANSSYPLEEQVISDLTFLFDSIIDPDKMACYRPKIMRKRVADSARKLLDCKQFMKDYKPYEIAVEMPSVIRLWCHVELADQPKDDPSPPPELIVLSLNATVADLKSEATSAFQEVYAMYKRFQAEELLGYGSISDSLTIKFLIGTSGSIQIQGKCPAKHGLSRFRMERGTEVWKVDCTCGAKDDDGEKMLACDTCGVWQHTRCAGINNSDGMPSKFVCMRCVNSYREDTKKLPSYGEEANKTCKFNTSCRDEAVARDCATVSCNIAVNFGSLGPIGCIARLYRAQ	725

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr12786g00001	725	Pfam	PHD-finger	617	663	IPR019787	-
	Mupr12786g00001	725	SUPERFAMILY	FYVE/PHD zinc finger	606	664	IPR011011	-
	Mupr12786g00001	725	CDD	PHD_MMD1_like	616	661	-	-
	Mupr12786g00001	725	ProSitePatterns	Uncharacterized protein family UPF0054 signature.	180	190	IPR020549	-
	Mupr12786g00001	725	SMART	PHD_3	616	662	IPR001965	-
	Mupr12786g00001	725	ProSitePatterns	Zinc finger PHD-type signature.	617	661	IPR019786	-
	Mupr12786g00001	725	PANTHER	PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED	13	673	-	-
	Mupr12786g00001	725	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	602	668	IPR013083	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr12786g00001	Mupr-Chr12786	9364	12798	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr12786g00001	80	661	PHD Transcription Factor Family	AT5G22260	27.896	2.27e-86	284

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	PHD	Mupr12786g00001		PHD	1.8e-09	CL0390

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr12786g00001	K26271		-	gmx:100780558	1278.08

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