Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12782g00001 ATGGACTTTGTGCCAAATCCGTGTCCTATGCGTTCCTCTTCGTTCGTGAATCTCGTCGAGAGGGTTAAACAGCTTGGTACCCTCGCTGTCTCTGCTGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTTTGCTTCGCATTAGTTGGCACTTTGTTGGGGGCTCTGACTGGAGCTTTGATAGGACAAGAAACTGAGAGTGGCTTCATTCGAGGGGCTGCTGTTGGTGCCATATCAGGAGCTGTTTTTTCCATTGAAGTGTTTGAATCCTCTCTTGTTCTATGGCAATCTGACGAATCTGGGATTGGCTGTGTCTTATACTTGATTGATGTTATTGCCAGCTTACTGAGTGGGAGACTAGTGCGTGAGAGGATTGGTCCAGCCATGTTGAGTGCTGTACAAAGTCAGATGGGTGCTGTTGAAACCAGCTTTGACGAGGTTCAAAACATCTTTGACACCGGTGGTTCCAAAGGTTTGTCTGGAGATTTGGTTGAAAAAATCCCAAAAATCAAAATCACAACTGACAACAATGATGATGCATCCGGTGATAGAGTTTCTTGTTCTGTTTGCCTGCAGGACTTTCAGCTTGGAGAGACGGTGAGAAGCTTACCTCATTGCCATCACATGTTTCACCTACCCTGCATAGATAAGTGGCTCTTCAGGCATGGTTCTTGCCCATTGTGCAGAAGGGATCTTTCTGTATACGGACATGGAGCAAATGATTGGTTCCCTGGCATTTCCCATTCTGAATATATATATCCTACAAGG 768 0.4583 MDFVPNPCPMRSSSFVNLVERVKQLGTLAVSAVIGNIFSAILTFCFALVGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCVLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVETSFDEVQNIFDTGGSKGLSGDLVEKIPKIKITTDNNDDASGDRVSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDKWLFRHGSCPLCRRDLSVYGHGANDWFPGISHSEYIYPTR 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12782g00001 256 SMART ring_2 187 228 IPR001841 -
Mupr12782g00001 256 FunFam NEP1-interacting protein-like 1 147 232 - -
Mupr12782g00001 256 Pfam Ring finger domain 186 229 IPR001841 -
Mupr12782g00001 256 CDD RING-H2_NIPL1-like 186 229 - -
Mupr12782g00001 256 ProSiteProfiles Zinc finger RING-type profile. 187 229 IPR001841 -
Mupr12782g00001 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 234 IPR013083 -
Mupr12782g00001 256 SUPERFAMILY RING/U-box 186 235 - -
Mupr12782g00001 256 Pfam YMGG-like Gly-zipper 46 81 IPR027367 -
Mupr12782g00001 256 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 18 231 IPR044523 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12782g00001 Mupr-Chr12782 5441 7586 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12782g00001 12 232 C3H Transcription Factor Family AT5G66070 76.923 2.99e-119 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12782g00001 - - gmx:100807641 441.039