Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12694g00002 ATGGGGCTGCATCACAGAAAATTGTTGCCAGAAATCTGTGAGTCAATTTGTCATGTGAAGGAGTCTGAGCCTTGTTTATCAGATTGCACAATTTGCCTCAAGATCTGTCTAACCAGTCCCCCCCAATATCCTTATTATTCTCCTCCTCCACCACCACAACTTGCTCATTTCCACTTAGATGATGGTGGTGCAGATCAAGGAAACAACCACAAAATCTCCACCTATTTGTTCCTCGCCCTCGCTCTTCTAAGTGCTGCTTTTTTTGTTGTTTGTTGTCGTGCCATCTACACCAGGTTTGGCTCAAGGAGGAGGGCATCATCAAGGCACCAAACTCAGGAGACCCCTCATGATGATGAAGAGCGTGGCCCTGTGGTGGACCACCCCATCTGGTATATTCGCACCCTTGGCCTTCAGCAATCGATTATCAATGCCATCACAGTTTGTGAGTATAAGAAAGGAGAGGGCTTGATTGAGGGAACTGAGTGTGCTGTTTGCTTGAGTGAGTTTCAGGAGGATGAGAATCTCAGACTCTTGCCAAAATGTAATCATGCTTTTCATCTGCATTGTATTGATACCTGGCTTAGGTCCCATACCAATTGTCCCATGTGCCGGGCTCCCATTGTTAATGACCTTGCAGCTGCTAGGATGGAGTCTACTTTTGTTGATTCAAATTCCTTGGGGAGTATCCATGTGGAAATTTTGGAAAATAATGCTCCTGATTCTGAATTGTTGAATAGGACACAGGAATCAGAAGAAGAAGAAGAAGGACAGTTGGAGGTTGAAGATGGAGTAAGTGTAAGGGTGTGTGAAACTGAAACCCCAGTTGAAGAGGTGGCAAGCATTCGTCCGAGAAGATCTATTTCTCTGGATTCTTCTGCTGTTGAAAATATCAATCTTGCTCTTGCAGAAACGGTTCTATCAGTGGAATCTAATGGTAACTCAAACAGAGTGCTGGCAAGTGTGGATGATGATCCTACTGCTTCAAAGGGGGTTTCTGGAAACGATTTGGCAACTACTTCTAGAGGTAGTTCATCTTTAAGGTTTACAAGATATCTGCAGGGTGTTCCTAGTGCGATGAAAAGGTCACAGTCCTACAATGGGAAATACCTTCTGTCCTGGTACGGCCGCAGTCAGAAGAAGCCAAATATTCCTCTGAGAAGCTCTTAA 1167 0.4464 MGLHHRKLLPEICESICHVKESEPCLSDCTICLKICLTSPPQYPYYSPPPPPQLAHFHLDDGGADQGNNHKISTYLFLALALLSAAFFVVCCRAIYTRFGSRRRASSRHQTQETPHDDEERGPVVDHPIWYIRTLGLQQSIINAITVCEYKKGEGLIEGTECAVCLSEFQEDENLRLLPKCNHAFHLHCIDTWLRSHTNCPMCRAPIVNDLAAARMESTFVDSNSLGSIHVEILENNAPDSELLNRTQESEEEEEGQLEVEDGVSVRVCETETPVEEVASIRPRRSISLDSSAVENINLALAETVLSVESNGNSNRVLASVDDDPTASKGVSGNDLATTSRGSSSLRFTRYLQGVPSAMKRSQSYNGKYLLSWYGRSQKKPNIPLRSS 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12694g00002 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 212 IPR013083 -
Mupr12694g00002 388 ProSiteProfiles Zinc finger RING-type profile. 162 204 IPR001841 -
Mupr12694g00002 388 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 68 209 IPR044675 -
Mupr12694g00002 388 Pfam Ring finger domain 161 204 IPR001841 -
Mupr12694g00002 388 CDD RING-H2_EL5-like 161 204 - -
Mupr12694g00002 388 SUPERFAMILY RING/U-box 156 210 - -
Mupr12694g00002 388 MobiDBLite consensus disorder prediction 319 341 - -
Mupr12694g00002 388 SMART FANCL_C_2 158 211 - -
Mupr12694g00002 388 SMART ring_2 162 203 IPR001841 -
Mupr12694g00002 388 FunFam RING-H2 finger protein ATL54 137 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12694g00002 Mupr-Chr12694 3691 4857 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12694g00002 72 208 C3H Transcription Factor Family AT1G72220 54.483 5.47e-45 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12694g00002 - - gmx:100804758 553.132