Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12694g00001 ATGTCTAACTCGGAGACAAAGAAGAAGAAGCGCAGCAGCGGCAAACAGTCGGAGGATGATACGAAAGAGGAGGGGTTGATGATAAAGCCCCAGAGCTTCACTCCCTCCATCGACACCTCCCAATGGCCCATCCTTCTCAAAAACTACGACCGCCTCAATGTCCGCACCGGTCACTACACTCCCATCCCTTCCGGATACTCTCCCCTTAAGCGCCCCCTCGCCGAGTACCTTAAGTACGGCGTCCTCAACCTCGACAAGCCCGCCAACCCCTCCTCTCACGAGGTTGTCGCGTGGATCAAGCGCATCCTCCGCGTCGAGAAAACCGGTCACAGCGGCACCCTCGACCCCAAGGTCACCGGCAACCTCATCGTCTGCATCGACCGCGCCACCCGCCTCGTCAAGTCCCAGCAGGGCGCCGGCAAGGAGTATGTCTGCATCGCCCGCCTCCACTCCGCCGTCCCCGACCCTTCCAAGGTCGCCCGCGCCCTCGAGACCCTCACCGGCGCCGTCTTCCAGCGCCCTCCTCTCATCTCCGCCGTTAAGCGTCAGCTCCGCATTCGCACCATCTACGAAAGTAAGCTCCTTGAGTTCGACCCTGATAAGCACTTGGTTGTTTTCTGGATTTCCTGCGAAGCTGGCACCTATGTCAGGACCATGTGCGTCCACTTGGGCCTTCTTCTCGGTGTCGGTAGCCACATGCAGGAACTTAGGAGGGTTCGCTCTGGCATCATGGGCGAGAAGGATAACATGGTTTCCATGCACGATGTCATGGATGCTCAGTGGGTTCATGATAATTTTAGAGACGAGACTTACCTCAGGAGGGTTGTTATGCCCTTGGAGGTTCTCTTGACTAGTTATAAGAGGCTTGTTGTTAAGGACTCTGCTGTTAACGCCATTTGTTATGGTGCCAAGTTGATGATTCCTGGATTGCTTAGGTTCGAGAATGATATTGATGTTGGGGAGGAGGTTGTGCTCATGACTACCAAGGGTGAGGCCATTGCTCTTGGGATTGCTGAGATGACTACTGCTGTTATGGCCACTTGTGATCATGGTGTTGTGGCCAAGATCAAGAGGGTGGTCATGGATAGGGATACTTATCCCAGGAAGTGGGGCTTGGGCCCCAGGGCTTCCATGAAGAAGAAGCTCGTTGCCGAAGGGAAGCTGGATAAGCATGGCAAGCCCAATGATAAGACTCCCCAGGAGTGGCTTAGGAATTTGGTTTTGCCATCTGGTGGGGATAGTGTCATTGCTGGCATGGCTGCTGCCCCTGAACCTGAGGATGAGAAGGTTAAGAAGGATGGAGATGGAGATGGAGAAGGGCGGAAGAGGAAGAAGCATGATAGCACGGATAGCCCGCTTTTGGTTCCTGCTAAGAAGGTGAAAGTGGATGAAGTAGTCGAAGAGGCTGTGGAGGTTGAAGTCGGGAAGAAGGAGAAGAAGAAGAAAAAGAAGAAGGATAAAGAGGGAAGCGAAGTGGTGTCTTCTGATGAGGAGAAGGCTGAGAAGAAGAAGAAGCACAAGGATAAGGTTGAAGATGGTTCGCCTGATGTAGACAAGTCTGAGAAGAAAAAGAAGAAGAAGAAAGACAAAGATGCTGCTGAAGATGCCCCTGCTGAAATTAGCAACGGAAAGGATGATAAGAGTGAAAAGAAGAAGCATAAGAAAAAGAAAAACAAAGATGCCGAGGAAGAATAG 1695 0.5245 MSNSETKKKKRSSGKQSEDDTKEEGLMIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPIPSGYSPLKRPLAEYLKYGVLNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDPSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEFDPDKHLVVFWISCEAGTYVRTMCVHLGLLLGVGSHMQELRRVRSGIMGEKDNMVSMHDVMDAQWVHDNFRDETYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLVAEGKLDKHGKPNDKTPQEWLRNLVLPSGGDSVIAGMAAAPEPEDEKVKKDGDGDGEGRKRKKHDSTDSPLLVPAKKVKVDEVVEEAVEVEVGKKEKKKKKKKDKEGSEVVSSDEEKAEKKKKHKDKVEDGSPDVDKSEKKKKKKKDKDAAEDAPAEISNGKDDKSEKKKHKKKKNKDAEEE 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12694g00001 564 SMART pua_5 287 361 IPR002478 GO:0003723
Mupr12694g00001 564 SMART DKCLD_2 38 96 IPR012960 -
Mupr12694g00001 564 Pfam PUA domain 287 359 IPR002478 GO:0003723
Mupr12694g00001 564 Coils Coil 544 564 - -
Mupr12694g00001 564 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 46 371 IPR004802 GO:0006396
Mupr12694g00001 564 MobiDBLite consensus disorder prediction 460 477 - -
Mupr12694g00001 564 Gene3D PUA domain 39 370 IPR036974 GO:0003723
Mupr12694g00001 564 MobiDBLite consensus disorder prediction 1 29 - -
Mupr12694g00001 564 Gene3D Pseudouridine synthase 72 278 - -
Mupr12694g00001 564 CDD PseudoU_synth_hDyskerin 78 260 - -
Mupr12694g00001 564 MobiDBLite consensus disorder prediction 1 26 - -
Mupr12694g00001 564 Pfam DKCLD (NUC011) domain 39 96 IPR012960 -
Mupr12694g00001 564 SUPERFAMILY PUA domain-like 286 367 IPR015947 -
Mupr12694g00001 564 SUPERFAMILY Pseudouridine synthase 39 284 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mupr12694g00001 564 Pfam tRNA pseudouridylate synthase B C-terminal domain 217 283 IPR032819 -
Mupr12694g00001 564 CDD PUA_Cbf5 285 359 - -
Mupr12694g00001 564 MobiDBLite consensus disorder prediction 414 564 - -
Mupr12694g00001 564 MobiDBLite consensus disorder prediction 424 452 - -
Mupr12694g00001 564 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 5 550 IPR004802 GO:0006396
Mupr12694g00001 564 MobiDBLite consensus disorder prediction 484 548 - -
Mupr12694g00001 564 Pfam TruB family pseudouridylate synthase (N terminal domain) 100 216 IPR002501 GO:0006396
Mupr12694g00001 564 NCBIfam uncharacterized domain 2 282 358 IPR004521 GO:0003723
Mupr12694g00001 564 ProSiteProfiles PUA domain profile. 286 361 - -
Mupr12694g00001 564 FunFam H/ACA ribonucleoprotein complex subunit CBF5 72 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12694g00001 Mupr-Chr12694 844 2538 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12694g00001 4 461 NAC Transcription Factor Family AT3G57150 82.646 0.0 745