Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1268g00016 ATGGACTCACCGAGTAATCACCACACCGTCGACGGAGATGCCAACGATGTCAGACCCTTTTCCCACAGAGACGACGACGATGACAAGCCCCAACCTCTCACCGGCGACGGCGCCAGTCCCGGGTCGATTTGGTTCTGTCTAATTACACTGGACCCCGTTAATTGCAGAAAGATATTTATAGGGGGTTTAGCGAGAGAAACGACCATTGGTCAGTACTATCTTGCCCAATTTATCAAGCACTTTGGTAAATACGGCGAGATAACGGATTCCGTTATCATGAAGGACCGTAAGACTGGCCAACCTCGCGGTTTTGGCTTCATAACCTACGCCGATCCCTCTGTGGTTGACAGAGTTATTGAGGACACTCACATTATCAATGGCAAGCAGGTGGAGATTAAGCGCACGATACCAAGGGGAGCCGTTGGCTCAAATTCGAAGGACTTCAGGACGAAGAAGATTTTTGTTGGTGGAATTCCCTCTACCGTGACCGAAGATGAATTTAGGGACTTCTTTACACGTTATGGAGAAGTCAAAGATAACCAAATAATGCGGGACCACTCTACTAATCGTTCTCGTGGCTTTGGGTTTATCACCTTTGACTCTGAAGAAGCTGTTGATGATCTCTTAGCTTTGGGAAACAAAATTGAGTTTGCTGGAGCTCAGGTGGAAATCAAGAAGGCAGAACCAAAGAAGCCAAATCCACCAGCTCCATCATCCAAGCGCTATAATGAGTCTCGGTCTTCATATGGTGGTGGATATGGAGATGCATATGATGGATTTGGTGGTAATTTTGGTATGGGTGGCTATAGGTCAGGTGGTGCCTATGGTGGTAGGGGAAGTGCTTATGGTGGCTTTGGAAGTGAATTTGGTGGATACGGAGGATATGCTGGTGCCATGGGGCCTTATAGAGGTGATCCTTCTCTTGGGTATGCTGGTCGATATGGTGGAGGCTTTGGCAGAGGTTATGATCTTGGTGGGTATGGTGGAGCTAATGAGGGTTATGGGGCATATGGTGGTGGTGGTTCCTCTGGTAGTGCCTATGGAGGAAGCTACGATGCCAGTCTAGGGGGTGGATATGGGGGAACTGGTGGAGGCTCCTTTTATGGGACTAGAGGGGGATATGGTGGTGCAGGATCTGGTCGATATCATCCTTATGGAAGATAG 1164 0.4854 MDSPSNHHTVDGDANDVRPFSHRDDDDDKPQPLTGDGASPGSIWFCLITLDPVNCRKIFIGGLARETTIGQYYLAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDRVIEDTHIINGKQVEIKRTIPRGAVGSNSKDFRTKKIFVGGIPSTVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEEAVDDLLALGNKIEFAGAQVEIKKAEPKKPNPPAPSSKRYNESRSSYGGGYGDAYDGFGGNFGMGGYRSGGAYGGRGSAYGGFGSEFGGYGGYAGAMGPYRGDPSLGYAGRYGGGFGRGYDLGGYGGANEGYGAYGGGGSSGSAYGGSYDASLGGGYGGTGGGSFYGTRGGYGGAGSGRYHPYGR 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1268g00016 387 FunFam Heterogeneous nuclear ribonucleoprotein 1 143 264 - -
Mupr1268g00016 387 FunFam Heterogeneous nuclear ribonucleoprotein 1 55 142 - -
Mupr1268g00016 387 MobiDBLite consensus disorder prediction 1 32 - -
Mupr1268g00016 387 SUPERFAMILY RNA-binding domain, RBD 147 259 IPR035979 GO:0003676
Mupr1268g00016 387 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 151 229 IPR000504 GO:0003723
Mupr1268g00016 387 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 56 137 IPR000504 GO:0003723
Mupr1268g00016 387 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 39 387 - -
Mupr1268g00016 387 SMART rrm1_1 57 133 IPR000504 GO:0003723
Mupr1268g00016 387 SMART rrm1_1 152 225 IPR000504 GO:0003723
Mupr1268g00016 387 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 153 220 IPR000504 GO:0003723
Mupr1268g00016 387 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 58 130 IPR000504 GO:0003723
Mupr1268g00016 387 MobiDBLite consensus disorder prediction 1 36 - -
Mupr1268g00016 387 MobiDBLite consensus disorder prediction 225 247 - -
Mupr1268g00016 387 SUPERFAMILY RNA-binding domain, RBD 51 140 IPR035979 GO:0003676
Mupr1268g00016 387 Gene3D - 142 259 IPR012677 -
Mupr1268g00016 387 Gene3D - 54 140 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1268g00016 Mupr-Chr1268 40706 43887 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1268g00016 58 211 Eukaryotic Initiation Factors Gene Family AT1G71770 24.852 4.94e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1268g00016 K12741 - gmx:100813165 444.506