Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12675g00001 ATGGTGGACGACTTCATTGTTTGCATTGATCGTGTTATAGCCTCCACGGCCTGTTTTGGATCTGTGGATGGACGAGAGTGTGATGGTGTTGACTCAATAATACACGTTTCTGACAATGGTGGAGAAGGGTGCTCCTCTTCTTCTTCTTCAAACAAGGATGATGTTGTTGTTGTTGAGTGTAGAATATGCCAGGAAGAAGATCAAGTCCAAGCCATGGAGGCCCCTTGTTCTTGTAATGGCACTCTCAAGTTTGCTCATAGGAAGTGTATCCAAAGATGGTGCAATAAGAAAGGAAATACGATATGTGAAATCTGTAATCAGGCATTTTCACCAAATTATTCTCTTCCACCAGTCAGAAGCAATGCAATTATGGCAATTGATATAAGGCAAGAATGGGGGCATAATACTGATCTCCATGTGGCTCTAGCTTCAGCAGAGCGCCAGTTGCTGCAAACTGAGTATGAAGATTATGCCATGTCACAAACCAGTAGCATTGCTTGTCTTCGCTCTGTCACTCTCATTTTGCTGATAATTTTGCTTGTACGCCAAGCTTTAATGCTCACAAAGAACTCTGCAACTGGGCAAGAAGCATCAATAATCTTTAACTTTGAGATGTCACTCCTTCAATTTGCTGGCATTCTTTTGCCATGCTATGCAATGGCACGTTCCTGGTATGTCATACAGCAGAACCGAAGGAGAAGACAGGGTCAAGTGATGGAACATGGATGA 729 0.4294 MVDDFIVCIDRVIASTACFGSVDGRECDGVDSIIHVSDNGGEGCSSSSSSNKDDVVVVECRICQEEDQVQAMEAPCSCNGTLKFAHRKCIQRWCNKKGNTICEICNQAFSPNYSLPPVRSNAIMAIDIRQEWGHNTDLHVALASAERQLLQTEYEDYAMSQTSSIACLRSVTLILLIILLVRQALMLTKNSATGQEASIIFNFEMSLLQFAGILLPCYAMARSWYVIQQNRRRRQGQVMEHG 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12675g00001 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 111 IPR013083 -
Mupr12675g00001 242 SMART ringv_2 59 106 IPR011016 GO:0008270
Mupr12675g00001 242 Pfam Protein of unknown function (DUF3675) 111 224 IPR022143 -
Mupr12675g00001 242 ProSiteProfiles Zinc finger RING-CH-type profile. 52 112 IPR011016 GO:0008270
Mupr12675g00001 242 SUPERFAMILY RING/U-box 56 109 - -
Mupr12675g00001 242 CDD RING_CH-C4HC3_MARCH 60 106 - -
Mupr12675g00001 242 Pfam RING-variant domain 60 105 IPR011016 GO:0008270
Mupr12675g00001 242 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 235 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12675g00001 Mupr-Chr12675 6377 10965 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12675g00001 59 105 C3H Transcription Factor Family AT2G37950 44.000 1.05e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12675g00001 - - gmx:100812120 392.504