Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12646g00001 ATGGAGGGTGGTGAGAAACCCACGGGTAACTCCCGTGGCATTGCTGATATGGATGTTGTTGATGCCACTTTGCAAAGCCAGCGTGTGGCTTCACCTGCTCAACTACAACAGGATCAAGTAATGGTTGAACATGGTGCTGATAACAAAAACGGCGATTCTGATCCTAGTCACGTGCCAGAAGCCAGTGTAATTAGCGAGAATCAGTTTGAACTTGAAGATGCTAAGACCGTTTCCCACCAGGAATTGATCACTCCAAAGCCTAAAGAAAAGAACGTCAGAGAAATGAAGAATGTTCTAAATGATACCGAGATGACGGAGTACGATGAGTATGGCACGCCTCTGGACCGAGAAACATTTATGAAAGAACTCGAGAATTTCTACAGAGAGCGGTCCATGGAATTTAAGCCTCCTAAGTTTTATGGAGAGCCACTAAATTGCCTTAAGTTATGGAAAGCTGTTATCAGACTAGGTGGCTATGATGTGGTAACTGGATCCAAGTTGTGGCGGCAAGTGGGAGAGTCTTTCCACCCCCCAAAGACCTGCACTACAGTCTCATGGACATTCAGAATCTTTTATGAGAAGGCGCTTTTAGAGTATGAAAAGCATAAGAGAGAGATTGGGGAGCTTCAGCTCCCAGTTGGATCATTTCATCAATCTTCAAATGTGGAAAAAGAGACTGCTGTTTACCCAGCTTCAGGCTCAGGTAGGGCGCGAAGGGATGCAGCAGCACGTGCAATGCAAGGTTGGCATGCTCAGCGCCTTCTTGGATACGGTGAGGTTGCTGAGCCAGTTGTTAAGGACAAAAACTTCAGTTCCACACCAAAGCGTGAAAAGAACCTAAAAAGTATTGGTATGATTAATAAACAGAGGATGCCATCTGGTCTGGAGCATGCTGAGAAAGCAGCAAATATTGAAGGAGATCGACAACTGCTTACAGCAGTAGTGGACATCGGACCTCCAGCTGACTGGGTGAAGATCAACGTGCGGGAAACTAAGGATTGTTTTGAGGTGTATGCACTTGTTCCTGGGCTCCTTCGTGAGGAGGTGCGAGTCCAATCAGATCCAGTTGGACGACTTGTTATAACTGGTCTGCCAGAACACATTGACAATCCATGGGGAATTACTCCCTTCAAAAAGGTTGTGAACTTACCTGCGAGAATTGATCCGCTTCAGACATCTGCTGTTGTTAGTTTGCATGGTCGACTATTTGTACGCGTTCCTTTTGAGCAGGGAGCTGTGTGA 1242 0.4614 MEGGEKPTGNSRGIADMDVVDATLQSQRVASPAQLQQDQVMVEHGADNKNGDSDPSHVPEASVISENQFELEDAKTVSHQELITPKPKEKNVREMKNVLNDTEMTEYDEYGTPLDRETFMKELENFYRERSMEFKPPKFYGEPLNCLKLWKAVIRLGGYDVVTGSKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKREIGELQLPVGSFHQSSNVEKETAVYPASGSGRARRDAAARAMQGWHAQRLLGYGEVAEPVVKDKNFSSTPKREKNLKSIGMINKQRMPSGLEHAEKAANIEGDRQLLTAVVDIGPPADWVKINVRETKDCFEVYALVPGLLREEVRVQSDPVGRLVITGLPEHIDNPWGITPFKKVVNLPARIDPLQTSAVVSLHGRLFVRVPFEQGAV 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12646g00001 413 Gene3D - 312 412 IPR008978 -
Mupr12646g00001 413 CDD ACD_sHsps_p23-like 328 407 - -
Mupr12646g00001 413 SMART bright_3 114 205 IPR001606 GO:0003677
Mupr12646g00001 413 ProSiteProfiles ARID domain profile. 113 204 IPR001606 GO:0003677
Mupr12646g00001 413 Pfam ARID/BRIGHT DNA binding domain 116 200 IPR001606 GO:0003677
Mupr12646g00001 413 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 312 413 IPR002068 -
Mupr12646g00001 413 CDD ARID 115 200 - -
Mupr12646g00001 413 FunFam AT-rich interactive domain-containing protein 3 304 412 - -
Mupr12646g00001 413 SUPERFAMILY ARID-like 101 210 IPR036431 GO:0003677
Mupr12646g00001 413 FunFam AT-rich interactive domain-containing protein 3 113 212 - -
Mupr12646g00001 413 MobiDBLite consensus disorder prediction 1 60 - -
Mupr12646g00001 413 MobiDBLite consensus disorder prediction 24 43 - -
Mupr12646g00001 413 Gene3D - 114 211 IPR036431 GO:0003677
Mupr12646g00001 413 SMART ARID_2 110 200 - -
Mupr12646g00001 413 SUPERFAMILY HSP20-like chaperones 321 408 IPR008978 -
Mupr12646g00001 413 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 45 410 IPR045147 GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12646g00001 Mupr-Chr12646 5448 14995 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12646g00001 15 410 ARID Transcription Factor Family AT1G76510 61.209 2.39e-160 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mupr12646g00001 ARID 3.8e-17 CL0123