Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1260g00002 ATGTCGAGCGCCAAGAAGAGCCGTGGCCGCCAAAAGGTGGAGATGAAGAAGATGAGCAACGAAAGCAACCTCCAAGTCACGTTCTCCAAGCGCCGCAGCGGGCTTTTCAAGAAAGCGAGTGAACTCTGCACCCTCTGCGGTGCTGACGTGGCACTCATTGTGTTCTCCCCCGGCGAGAAGGTCTTCTCCTTCGGCCACCCCAACGTGGACGCTGTGATAGACCGCTATCTGGCGCGAGCCCCACCGCCGAACTCGGGCACCATGCAGTTCCTGGAGGCCCACCGCATGGCCAACCTGAGTGGGCTAAACGCGCAGCTGACTGAGATGAACAACCAGCTGGATGAGGAGAGGAAGCGACACGAGGAGCTGGCCCGTTTGAAGAAGGGCGCGCAGGCCCAGATGTGGTGGGCCTTGCCGATCGAGGAGATGAGTAGGGCCCAGCTGGAGCAGTACAAGGTGGCGTTGGAGGAGCTGAAGAAGCACGTTCCGCGCCTTGCTGATGGGGCTATGCTTCAGAGTGCTATGAAGCCGCCTCAGTTTTACCCTGGGGCTTCTTCCTCTTCCAACATTGTGCATCAGCCACACCCACCTTCACCCCAGGCTTTGCTTGTTTCATGTAGGTGGCATGTTAGCACTTATCCGGCTTCCGATATTCCAGACATGTCTTGA 669 0.5815 MSSAKKSRGRQKVEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALIVFSPGEKVFSFGHPNVDAVIDRYLARAPPPNSGTMQFLEAHRMANLSGLNAQLTEMNNQLDEERKRHEELARLKKGAQAQMWWALPIEEMSRAQLEQYKVALEELKKHVPRLADGAMLQSAMKPPQFYPGASSSSNIVHQPHPPSPQALLVSCRWHVSTYPASDIPDMS 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1260g00002 222 Gene3D - 20 85 IPR036879 GO:0003677|GO:0046983
Mupr1260g00002 222 PANTHER MADS BOX PROTEIN 10 162 - -
Mupr1260g00002 222 Coils Coil 141 161 - -
Mupr1260g00002 222 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Mupr1260g00002 222 Coils Coil 96 133 - -
Mupr1260g00002 222 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Mupr1260g00002 222 MobiDBLite consensus disorder prediction 1 21 - -
Mupr1260g00002 222 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Mupr1260g00002 222 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Mupr1260g00002 222 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Mupr1260g00002 222 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Mupr1260g00002 222 Gene3D - 86 173 - -
Mupr1260g00002 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Mupr1260g00002 222 SUPERFAMILY SRF-like 9 82 IPR036879 GO:0003677|GO:0046983
Mupr1260g00002 222 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1260g00002 Mupr-Chr1260 17456 18344 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1260g00002 4 188 Type I MADS-box Gene Family AT5G60440 53.723 1.89e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr1260g00002 SRF-TF 8.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1260g00002 - - gmx:100794751 298.901