Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12561g00001 ATGAGCCAACGTGTCCCTAGCTGCGATGTGGACCACAATAATAAGAATAACAATAGCACAAAAACCCCTCTTCTTCCAATCCCCAATCCCATGGCCATTGAAGTCCCAATGTTGGGGTGCCAAGTTGGGGAACTACCATACAAAAAGGGACAACCTTCGACGCACGAAGGCACCGCTGGATCATCGAACCTTGCTACATGGGACAAACCTCGAGCAAGCGGTACTTTGGAGTCCGTAGTTAACCAACGTGTCGGCGTTACTATGGACGCCTTGGTGCCCTCTTTGAAACATGGCGTCTTCAAGGTGCAAGAGTCCGGAGGAACCCTTGGCGCGTGCATGCCGGGTTGCTCCGCGCGCGTGCCGCGTGCCTCTATAACGCACGACTTCAGTGTCAGTGGTAGTGACTCTTGTAGGGACTTGAGTGTGCCTTTCAATTCTGCGTCCTTGCCTTCGCCGGAAAATACCACCACCTCCGGCAAGCAGTGTACCAGGACCACCGCCAATGACGACCGCGATTCCATTAGCCACCGTAGTGAGGCACGGAACGAGGATTACAAGACAACAAGAGTTGATAGATCTTCTGAATCCAATAAAAGAATCAAAGCTTCAGCTGTACACAACCAATCTGAAAGGAGAAGGAGAGACAAGATCAACGAAAGAATGAAGGCATTGCAAAAGCTGGTCCCAAATTCCAGTAAGACCGACAAAGCTTCGATGCTGGATGAGGTGATCCAATATATGAAGAACTTGCAAGCGCAACTGGTAATGATGAATTGGATGAAAATGTACTCCTCCATGATGCTGCCAATTACCATGCAACAACAACTTAAAATGTCTATGATGATGACTCAGATGTGCATTGCAATGGGAATGAATAAGGATATGGTTATGAATATGAACATTCCCACCATCCCTCCAGTCCTCCACCCTACAGTCCCTACACCCTTCATGCCTGTGGCCTCATGTGGCGATGGATTACAAGGAGCTCCTGCGAAGTCCGTGACCATGGATGCATACAGTAAGATGGCTGCCCTGTATCAACAGCTGTATCATCCTCCAGCTTCTACTTCCAAGAGCTGA 1080 0.4907 MSQRVPSCDVDHNNKNNNSTKTPLLPIPNPMAIEVPMLGCQVGELPYKKGQPSTHEGTAGSSNLATWDKPRASGTLESVVNQRVGVTMDALVPSLKHGVFKVQESGGTLGACMPGCSARVPRASITHDFSVSGSDSCRDLSVPFNSASLPSPENTTTSGKQCTRTTANDDRDSISHRSEARNEDYKTTRVDRSSESNKRIKASAVHNQSERRRRDKINERMKALQKLVPNSSKTDKASMLDEVIQYMKNLQAQLVMMNWMKMYSSMMLPITMQQQLKMSMMMTQMCIAMGMNKDMVMNMNIPTIPPVLHPTVPTPFMPVASCGDGLQGAPAKSVTMDAYSKMAALYQQLYHPPASTSKS 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12561g00001 359 MobiDBLite consensus disorder prediction 1 27 - -
Mupr12561g00001 359 MobiDBLite consensus disorder prediction 165 216 - -
Mupr12561g00001 359 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 201 250 IPR011598 GO:0046983
Mupr12561g00001 359 Coils Coil 207 227 - -
Mupr12561g00001 359 Pfam Helix-loop-helix DNA-binding domain 205 251 IPR011598 GO:0046983
Mupr12561g00001 359 Gene3D - 196 260 IPR036638 GO:0046983
Mupr12561g00001 359 MobiDBLite consensus disorder prediction 49 69 - -
Mupr12561g00001 359 SMART finulus 207 256 IPR011598 GO:0046983
Mupr12561g00001 359 MobiDBLite consensus disorder prediction 54 69 - -
Mupr12561g00001 359 CDD bHLH_AtPIF_like 201 263 IPR047265 -
Mupr12561g00001 359 MobiDBLite consensus disorder prediction 143 216 - -
Mupr12561g00001 359 MobiDBLite consensus disorder prediction 1 25 - -
Mupr12561g00001 359 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 94 357 IPR031066 -
Mupr12561g00001 359 MobiDBLite consensus disorder prediction 143 164 - -
Mupr12561g00001 359 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 203 268 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12561g00001 Mupr-Chr12561 2076 7222 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12561g00001 1 262 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 38.047 2.60e-42 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mupr12561g00001 HLH 1.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12561g00001 - - gmx:100788617 420.239