Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12557g00002 ATGGATTCGGAGGATTCAGTGAAACAAGAATTGGAGGAATTGCAGAAACAATTGGGGAAGAAGCAAAAGTTTGAAGCCTCCGTTTCGTCCCTCAAATCCCTTCTCCAACGCGCTTATCCTTCAGCTTCTCCCTCGCTTCGCAAATCCTTTTATTCGGTTATATGCCGAGTTGCTACTGTGTTGAAGACCAGGTATACAGCGCCAGGTTTCTGGAATGCTGGACTGGGCCTTTTTGAGCAGGCTCATTTGCTTGTTTCTGAACCTGCTGAGAAGGAGCACTTGAAGGCTTGCATTGCTCAGGCCAGGGAACATTTGCATCTAGAAGACAACCCATCACAACCTTCACAACTTACAGATAATCAGGCAAACAGAGGATATCTTTTTGAGGGGCACCTTACGGTTGATCCTGAACCAGCGCAGCCTCAATGGTTGGTGCAGTCAAACCTCTTGACAACAGCTGCTACACTCTTTGCTGCTGAATCCTCTCAAACTTCAGCAGCAAATGATACCACTCAAGAGGATGCAGCAAATATGCTTCAAGATCTTATAAATAGATTGGAGGAAGTTGTGCCCTTGGTTCAGCTTCTGAAGTTGAATAAGTTTCAAGCAACTGATCTAATGTGGCTTAGTCATTGTTTGAACATAAGAAAACCAGGCAATAGTACTGTAGCTCCAAGAGCCCCTCCTGCCAGTAAAGAAGTTGTGGCAAAACTTCCAGTTATTACTCTCACAGAGGAAATCCTAGCTAATATGGGGAAAGATGTAGAGTGTGCAATTTGCAGGGAGAACTTGGTTTTAAATGACAAAATGCAAGAGTTGCCATGCAAGCACACATTTCACCCACCATGTCTAAAGCCGTGGCTGGATGAGCACAATTCTTGTCCAATCTGTCGGTTTGAGCTGCAAACTGATGATCATGCCTATGAGAGCTGGAAGGAGCGTGAAAAGGAAGCTGAAGAAGAGAGGAAAGGTGCTGAAAATGCAATTCGAGGTGGTGAATACATATTACACAATAAAGCGTCAATTTAA 1029 0.4431 MDSEDSVKQELEELQKQLGKKQKFEASVSSLKSLLQRAYPSASPSLRKSFYSVICRVATVLKTRYTAPGFWNAGLGLFEQAHLLVSEPAEKEHLKACIAQAREHLHLEDNPSQPSQLTDNQANRGYLFEGHLTVDPEPAQPQWLVQSNLLTTAATLFAAESSQTSAANDTTQEDAANMLQDLINRLEEVVPLVQLLKLNKFQATDLMWLSHCLNIRKPGNSTVAPRAPPASKEVVAKLPVITLTEEILANMGKDVECAICRENLVLNDKMQELPCKHTFHPPCLKPWLDEHNSCPICRFELQTDDHAYESWKEREKEAEEERKGAENAIRGGEYILHNKASI 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12557g00002 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 304 IPR013083 -
Mupr12557g00002 342 FunFam E3 ubiquitin-protein ligase RNF181 219 304 - -
Mupr12557g00002 342 Coils Coil 308 328 - -
Mupr12557g00002 342 ProSiteProfiles Zinc finger RING-type profile. 257 298 IPR001841 -
Mupr12557g00002 342 Pfam Ring finger domain 256 298 IPR001841 -
Mupr12557g00002 342 SUPERFAMILY RING/U-box 251 304 - -
Mupr12557g00002 342 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 144 301 - -
Mupr12557g00002 342 CDD RING-H2_RNF126-like 256 298 - -
Mupr12557g00002 342 SMART ring_2 257 297 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12557g00002 Mupr-Chr12557 6056 9287 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12557g00002 7 335 C3H Transcription Factor Family AT5G20910 59.878 1.90e-125 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12557g00002 K16274 - gmx:100798732 521.931