Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12544g00001 ATGTCTGTCATAGAAACCCCCGCAGTCCACCACCGCAGCGGGGGCGCCACCGATCACCACCGTCACCCGTCGAAGCGCAAATTCGACGATGAAGATGATGAGGAATTGTCGGACTTAGTCTGCGTGAGGATGAGGAAGGACGAGGCGAAGGCGGTGAATTCGTGGTCCGCATCGTCCGACGGCGGCGTGCAGCGATCGCACATCCAGTTCTTCGTGCGGATGATGTCCGGGGGAAACACGATTGTGATGCAGGCTTTTCCCGAAGACAGCGTGAAATCGATTCACGAGCGCATCCAGAGCATGAAAGGAATCCCAGTGTTCGAGCAGAGACTCATCTACCGAGGCAAGCAGCTTCAGTGGGAGCAGACTCTCTCCGAGTGTTCCATCCAAAACGACGCCAACCTTCAACTTGTTGGTCGCATGCGCAGCACGGAGCACCCTCAAGCCTGGCAAGTCATAAACGACATGGTTTCCCTCGTTTACCGTCTCTGCCGCGGCGAGACCTTTCACGACGCCACCAAGAGCGTCAAGGGTTTAATCACCAATTACCTGAGCATGACTCCCAGAATTGATAACGACTCTGCCTCTGGGTACTTTCAGATTTTCATGTCTTCTTCTGCCCCTGCTGTGCTTGTTATGCTCTATGTGTCCCCTTATGCAGGTAATAAGGACTGTGCTGATTCCTCTGTGAGGCACTTTTTGTGTTCTTGCCGCAATACCTTGGCTAAGGCATTGCACGGTCAGTGTGCGCGTGTGGTCTTGGAGTTTTGTAAATTGCTTAGGAGAGTGGGATGTGATGACCCTTTGTATCTCTATTGTCGGAGTACTTTTGGGTCCTTGTTGGAAACTGCTGGGGTTTCCTATGCTGGTTCTGATAATGCTAAGGGGTTGGTTTTGATTCAAGATATTTTCCCCTTTGTTTGCGAGCTTGCTAATAGCTTGTTGAGGGATTTGGACTTGAGTATGGATTCCCCCTCTGCCACTGGACCTTTGTCCAACGATGTTGGGGATTTTACTGCATTCTTAATGCCTTTGAGGACTGGAATTAAGGAGCAGCGAGCTCTCAAGGATTCTATGGCTCAAGAAAAACGCCATAAGGATCTCTTGCTCGCTGAAGAGATTGAATATCTTCATCGTTTGTATGTTGAGTTATTGAACAAAATTGATCTGTGCCTTCAAAAAATGGACCAGAGCTTGGCTGGCCAGGAAATGCTGGAAGGGGATCATCTTTATCCTGCCTGGTCTCATTATCTTTCCATCTTGAAGGAGATGTATCAAATTTCTAAGCTTTATGATGGTGCTGAAGAAAAACTTTGGAGCGTTCTGACACGCCACAGAAGTGTGCTGTGTTTGCTAATAGTTCGATATGCAAAGAGAACTGATGAGCATCAGTGGATTCTCGAGCATAGGAGCGTGACCAATTTCGAGTCTAGAAGGCATCTGGCTATGATGATGTTCCCGGAGGTGAAAGAAGACTATGAGGAGTTGCACGAGATGCTTATTGACAGGTCTCAGTTATTGGTTGAATCTTTTGAATACATAGCACGTGCTGAGCCTGAGTCTCTACATGCTGGCCTGTTTATGGAATTCAAAAATGAGGAAGCTACTGGCCCAGGTGTACTAAGGGAGTGGTTTCTTCTGGTGTGTCAAGCAATATTCAATCCACAAAATGCTCTTTTTGTGGCATGCCCAAATGATCGAAGGAGATTTTTCCCCAATCCT 1722 0.4814 MSVIETPAVHHRSGGATDHHRHPSKRKFDDEDDEELSDLVCVRMRKDEAKAVNSWSASSDGGVQRSHIQFFVRMMSGGNTIVMQAFPEDSVKSIHERIQSMKGIPVFEQRLIYRGKQLQWEQTLSECSIQNDANLQLVGRMRSTEHPQAWQVINDMVSLVYRLCRGETFHDATKSVKGLITNYLSMTPRIDNDSASGYFQIFMSSSAPAVLVMLYVSPYAGNKDCADSSVRHFLCSCRNTLAKALHGQCARVVLEFCKLLRRVGCDDPLYLYCRSTFGSLLETAGVSYAGSDNAKGLVLIQDIFPFVCELANSLLRDLDLSMDSPSATGPLSNDVGDFTAFLMPLRTGIKEQRALKDSMAQEKRHKDLLLAEEIEYLHRLYVELLNKIDLCLQKMDQSLAGQEMLEGDHLYPAWSHYLSILKEMYQISKLYDGAEEKLWSVLTRHRSVLCLLIVRYAKRTDEHQWILEHRSVTNFESRRHLAMMMFPEVKEDYEELHEMLIDRSQLLVESFEYIARAEPESLHAGLFMEFKNEEATGPGVLREWFLLVCQAIFNPQNALFVACPNDRRRFFPNP 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12544g00001 574 MobiDBLite consensus disorder prediction 1 31 - -
Mupr12544g00001 574 SUPERFAMILY Ubiquitin-like 68 156 IPR029071 -
Mupr12544g00001 574 Gene3D - 62 165 - -
Mupr12544g00001 574 SUPERFAMILY Hect, E3 ligase catalytic domain 493 574 IPR035983 GO:0004842
Mupr12544g00001 574 Gene3D Hect, E3 ligase catalytic domains 454 574 - -
Mupr12544g00001 574 PRINTS Ubiquitin signature 100 120 IPR019956 -
Mupr12544g00001 574 PRINTS Ubiquitin signature 121 142 IPR019956 -
Mupr12544g00001 574 PRINTS Ubiquitin signature 79 99 IPR019956 -
Mupr12544g00001 574 ProSiteProfiles Ubiquitin domain profile. 68 144 IPR000626 GO:0005515
Mupr12544g00001 574 ProSiteProfiles HECT domain profile. 518 574 IPR000569 GO:0004842
Mupr12544g00001 574 SMART ubq_7 68 140 IPR000626 GO:0005515
Mupr12544g00001 574 Pfam Ubiquitin family 71 142 IPR000626 GO:0005515
Mupr12544g00001 574 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 68 574 - -
Mupr12544g00001 574 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 62 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12544g00001 Mupr-Chr12544 2719 4440 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12544g00001 68 142 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 38.667 1.17e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12544g00001 - - gmx:100789233 1035.4