Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1250g00015 ATGGCTGGACTTGCACCCGAGGGCTCACAGTTCAATGCTAGTCAATATGATTCCAAAATGAATGACTTGCTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGATAGTTTTGACGCAATGGGTTTGCAGGAGAATCTTCTTAGGGGCATTTACGCATATGGTTTTGAAAAGCCATCAGCCATTCAGCAAAGGGGAATAGTTCCCTTCTGCAAGGGACTTGATGTTATTCAACAGGCTCAGTCTGGAACTGGGAAGACGGCTACTTTCTGCTCTGGTATTCTGCAGCAACTTGACTATAGCTTGACGCACTGCCAGGCCTTGGTTTTAGCACCAACTCGGGAGCTTGCTCAGCAGATTGAGAAGGTTATGCGGGCACTTGGAGATTATCTGGGTGTGAAGGTTCATGCTTGTGTGGGAGGTACCAGTGTCCGTGAAGACCAACGCATTCTATCTAGTGGTGTTCATGTCGTGGTTGGTACCCCTGGTCGCGTGTTTGATATGCTGCGCAGGCAGTCACTTCAGCCCGATTACATCAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTCTCCCGAGGTTTTAAGGATCAGCTGCTTCCATCTAAGATCCAAGTGGGAGTTTTCTCTGCCACAATGCCTCCTGAGGCCCTTGAGATCACAAGGAAGTTTATGAACAAACCT 696 0.4741 MAGLAPEGSQFNASQYDSKMNDLLSSDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLTHCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLQPDYIKMFVLDEADEMLSRGFKDQLLPSKIQVGVFSATMPPEALEITRKFMNKP 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1250g00015 232 FunFam Eukaryotic initiation factor 4A-II 28 232 - -
Mupr1250g00015 232 Pfam DEAD/DEAH box helicase 65 220 IPR011545 GO:0003676|GO:0005524
Mupr1250g00015 232 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 232 IPR027417 -
Mupr1250g00015 232 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
Mupr1250g00015 232 SMART ultradead3 59 232 IPR014001 -
Mupr1250g00015 232 CDD DEADc_EIF4A 44 232 - -
Mupr1250g00015 232 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Mupr1250g00015 232 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 232 IPR014001 -
Mupr1250g00015 232 Gene3D - 30 232 IPR027417 -
Mupr1250g00015 232 PANTHER RNA HELICASE 27 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1250g00015 Mupr-Chr1250 98045 100545 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1250g00015 1 232 Eukaryotic Initiation Factors Gene Family AT3G13920 85.774 4.12e-147 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1250g00015 K03257 - gmx:112999960 442.965