Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12508g00001 ATGGCGTTGGGATCACAAGTTTGTGGTACTGAGGATTTGAGTCAGCAGAAAGAAGAGATGGTGAGAGGAAAGACTCAGATGAAGCGTATAGAGAACGCCACAAGCCGGCAAGTAACTTTCTCAAAGCGAAGAAATGGGTTGCTGAAGAAGGCCTATGAGCTATCAGTTCTGTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTCCAAGAGGGAAGCTCTATGAATTTTCTAGCTCCAGGCTGCAGGTTAGTGATGTATCATATGTACCAAACTCTGACATATCATGGGATGGAGAGAGAGATAAAGAGAATAATCAAGGTGGACCCTCTATACTTATTTTATCGTCGTCGAATAAATTTGCTTTCTGA 369 0.4282 MALGSQVCGTEDLSQQKEEMVRGKTQMKRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSPRGKLYEFSSSRLQVSDVSYVPNSDISWDGERDKENNQGGPSILILSSSNKFAF 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12508g00001 122 PANTHER SERUM RESPONSE FACTOR HOMOLOG 22 82 - -
Mupr12508g00001 122 Coils Coil 13 33 - -
Mupr12508g00001 122 Gene3D - 32 93 IPR036879 GO:0003677|GO:0046983
Mupr12508g00001 122 SMART madsneu2 20 79 IPR002100 GO:0003677|GO:0046983
Mupr12508g00001 122 SUPERFAMILY SRF-like 20 82 IPR036879 GO:0003677|GO:0046983
Mupr12508g00001 122 ProSitePatterns MADS-box domain signature. 22 76 IPR002100 GO:0003677|GO:0046983
Mupr12508g00001 122 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 29 76 IPR002100 GO:0003677|GO:0046983
Mupr12508g00001 122 PRINTS MADS domain signature 42 57 IPR002100 GO:0003677|GO:0046983
Mupr12508g00001 122 PRINTS MADS domain signature 22 42 IPR002100 GO:0003677|GO:0046983
Mupr12508g00001 122 PRINTS MADS domain signature 57 78 IPR002100 GO:0003677|GO:0046983
Mupr12508g00001 122 CDD MADS_MEF2_like 22 79 IPR033896 GO:0000977|GO:0045944
Mupr12508g00001 122 ProSiteProfiles MADS-box domain profile. 20 80 IPR002100 GO:0003677|GO:0046983
Mupr12508g00001 122 FunFam Agamous-like MADS-box protein AGL13 32 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12508g00001 Mupr-Chr12508 14438 18561 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12508g00001 20 92 MADS-box Gene Family AT2G45660 79.452 1.42e-37 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr12508g00001 SRF-TF 5.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12508g00001 - - csin:114284376 120.553