Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12497g00004 ATACTCACTGGACAGTGGACAGTGGACAGTGGGAAATGTCAGTGGCGCTTCAATGTAGTGTCACTTAGTTCTACTAAAAGTGTGAAGAAAACAAATTTGAAAGGATTATCTAACATCAAATCCAATCATAATAGTTCTGAAGATTCTTCATCAAAAAATGTTTCACCTAGTGAATTTGGCATTCATGACACTTTTCAGATACAAAATGGGTCTCAAGTGTTAGAAGAACCACATTTTTCTAGGTTGGACTTTGTGGATTCAGTCACAAGCTGTTCTCCATTCTGCTCAGATGTGTCAGAGTCCGGGGCCAGAGGTTCAGTTGGTTTATCTGATTCTGCAGTGAATTCTATGCTTGACTGTGAACCTGAAAACCAGGGACCTCAATCTCAGGCTTGCTCTTCCCCAAATGCTTTTCCTGGTAATTTCAGTGACTCATTCTCTCCGGGTGAAAATGATGAGATTTTCTACACAGAAAGGACAAGAGTTTCTAAACATGAGATACCTGCTTATAGTGTGGAAGCAAGTTTCCCTGAGGCACAGTCAAACAATATATCAATTTGTGAAGGTAATTTGAATCTGAGTAGGTGGAAGGGTGAAAATGAGAGCCAATTCAGGCATGTGGGGGAGGATGTTGAATCTGAACATGCTTCACTAAGTTCTATTGTTGACAATGGTGATGTAAATATTGAAGGTTATGTTGGAGATATCATTGGAGGAGTTTCCGGGCAACAGGAAAATGACTCATGTACATCTTTTGAAGCATCATTCGTGGATGCTGATAGATCTTTGCATGTCACAACTTCAACTGATTCTACTATTGGTCAAGGTTCCAATGTTTCCAGTGATTTTTTTGACTACCATCTCTCTTCAAATTTTTACCAGGGAACAGATGATAGACCCTTTGTTGCTGCTGACTCTCCTCTTGGTTTTTTGCCCAATGGTATTTGTTCTCAATTGTGGCTAAATGAAGAAATGATGAATAACATGAAGGCTGAAAATGCAGAGTTAAATGCTGATATTGCATGTATGAGTGATGACATGCCCTCAAGCACTACTGGGTGGACACCTTTTCAAGATAGCCAAGCTATTTTAGTTGATAGTGGTTACCCATCATTTCGTTCTGGTAAAGTTATTTTTGATGACATGTCATCACTGCCTCTTTCAGCTTATCCTTCATACATGCCATATGGAGACCATTACCAAAACAATTTTCACAACGAGAATGTTGAGTTCAATGTAGGCCAAGAGGTGAAACAAATACCTAGGTGTCAGACTTACAAATATTTTAAGAATGAGGATAATTATGCAGTTATAACATCTGAGATATCCAATCAATATCAAGATAGCATTGGTGGAACTGCTAGTTTTCAAGGAAACATGGGCAATTTGAATTTAAAAGCTGAAGATATATCTTGGCCCCATGCCCAAACACTAATTGCCAGTGAGAAGCAGTTTGGTTGTGTTAAGAGAGAAGGAGGGGGCAAAATGATTCAACATAAACTTATTGATTCTCATCTTTCAAAAGGAGGAACTGAGAATTTCCATGTTGAGGAAGATCCTGATGTTTGCATTATTGAAGACATCAGTCATCCTGCTCCGATGAGTCAATCTGCAGACATTGGGAATTCCCTCAACATAACTCAGTCTTCTAGATATGTTGATTCCCAGTCTTGCATGGTTGGAAGCACAAGGGTGAAGGCATGTGATGAACGAAATATATTACGAGTTGCATTGCAGATGTGGGAATATTCTTCTCCTATTGCACATAACTCTTCTGTGGATCTATCTCAGCCAAAGTCAGAACTTAGCCCACCAGAAGGATTGTTGGCAGTTCCTCTTTTAAGACATCAGAGAATTGCTTTATCATGGATGGTTCAAAAGGAAACATCAAGTTTATATTGCTCAGGAGGAATTCTTGCAGATGATCAGGGACTTGGAAAAACAGTATCAACTATTGCATTAATATTAAAAGAAAGATCTCCATTACTTAATGGGTGCACCAATGTCCCAAAAAGTGAATTGGAAACTCTGAATCTGGATGTGGATGATGACATGCTTCCTCAGAATGGTAGAGTTAAGGAAGAATCTAATATGGGTGAGGATAAGTCAAGTACATGTCCAATCAAGAGCATGAATTTGTTGATGCAAGCAAAGGGAAGGCCATCTGCTGGGACCCTTATTGTTTGTCCCACTAGTGTCCTGCGCCAATGGGATGATGAGTTGCATAGTAAGGTAACTAGGCAGGCAAATCTTACTGTGCTATTGTACCATGGAAGCAATCGAACAAAAGATCCTTATGAGATGGCTAAGTATGATGTTGTTCTGACAACTTATTCCATTGTCAATATGGAGGTCCCTAAGCAGCCGCTAGTTGACAAAGATGATGAAGAAAGGGGAAATTTTGAAGATCATGCTGTACCAAGTAAGAAAAGAAAAAGCCCTTCTAGTTCTAGTAAAAGTGGCAAGAAGAGATTGGATGGCACAATTCTTGAAGCTGGTGTTCGGCCTCTTGCAAAGGTGGCATGGTTTAGGATTGTCCTGGATGAGGCTCATAGTATAAAGAATCACAAAACTCAAGTTGCAAGGGCCTGCTGCAGTCTTCGTGCTAAGCGAAGATGGTGTTTGTCAGGGACTCCCATCCAGAATGCAATCGATGATCTCTACAGTTACTTCAGGTTTCTAAGATATGACCCTTATGCTGTCTATACATCATTCTGTTCTACAATTAAGATCCCAATTAGCAGAAATCCAGCAAAAGGGTATAGAAAGCTACAAGCTGTCTTGAAGACAATAATGTTACGCCGGACCAAAGGCACATTTCTTGATGGGGAACCTATTATTTCCTTGCCGCCTAAACATATTGAGCTGAAAAAAGTTGAATTTTCAATGGAGGAACGTGATTTCTATTCCAGACTAGAGGCTGATTCACGTGCACAGTTTCAGGAGTATGCTGATGCTGGAACTGTCAAGCAAAATTATGTCAACATTTTGCTGATGCTTCTGCGCCTTAGACAAGCTTGTGATCACCCTTTGCTTGTCAAGCGTTACAATTCTAAAACTCTATGGAGATCTTCTGTTGAGATGGCAAAGAAGCTTCCTCAGGAAAAACAAATCTCTCTTCTGAAATGTTTAGAGGCTTCCTTGGCCCTCTGTGGCATTTGTAATGATCCCCCTGAAGATGCTGTAGTTTCAATTTGTGGCCATGTTTTCTGTAACCAATGCATCTGTGAACATCTTACTGGTGATGACAATCAGTGCACTGCTGCAAATTGCAAAATTCAACTGAGCACATCCTCGGTATTTTCAAAAGCCACACTGAACAGTTGTCTTTCTGACCAGGGTTGTGATAATTCACCCTGTTGCTCTGGTTCTGAAGCGGAAGAATTTGAGCCTTGGTCTCAAAGTCAGCCATATGATTCTTCAAAAATAAAGGCTGCACTTGAGGTTTTGAAGTCATTGCGTAAGCCACAGTGCTATACATCAAAAAGTATTTCTGAGAAGAGCACTTTCAGGGAAACTAATGACTGCCCTGGGAACCCCTCCGATGCTGACAATGGGAAATCCTTCAAAGATACTCCTGAGAGTCAAAATTTGCCTGAGGATAGAAGCTCTAATGATTCAGTTACTGTTGTAGGGGAGAAAGCGATAGTGTTTTCTCAGTGGACGAGGATGCTAGATTTGCTTGAAGGATGTCTTAAGAATTCTTCGATTCAGTATAGAAGGCTTGATGGAACAATGTCAGTTGTTGCAAGAGATAAAGCCATTAAAGATTTTAACACTCTTCCTGAGGTTTCAGTTATTATTATGTCTTTGAAGGCTGCCAGTCTTGGTCTAAACTTGGTGGTAGCTTGCCATGTTCTTATGTTAGATTTATGGTGGAATCCTACAACTGAAGATCAAGCAATAGATAGAGCACATCGAATTGGGCAGACTCGTCCTGTGACTGTTTTGCGGTTAACTGTAAGAGATACAGTTGAAGATCGTATTCTAGCTCTGCAGCAAAAGAAGAGAAAGATGGTTGCATCTGCATTTGGGGAGGATGGATCTGGTGATCGTCAGAGTCGCCTCACTGTGGATGATTTAAAATATTTGTTTATGATGTGA 4104 0.4033 ILTGQWTVDSGKCQWRFNVVSLSSTKSVKKTNLKGLSNIKSNHNSSEDSSSKNVSPSEFGIHDTFQIQNGSQVLEEPHFSRLDFVDSVTSCSPFCSDVSESGARGSVGLSDSAVNSMLDCEPENQGPQSQACSSPNAFPGNFSDSFSPGENDEIFYTERTRVSKHEIPAYSVEASFPEAQSNNISICEGNLNLSRWKGENESQFRHVGEDVESEHASLSSIVDNGDVNIEGYVGDIIGGVSGQQENDSCTSFEASFVDADRSLHVTTSTDSTIGQGSNVSSDFFDYHLSSNFYQGTDDRPFVAADSPLGFLPNGICSQLWLNEEMMNNMKAENAELNADIACMSDDMPSSTTGWTPFQDSQAILVDSGYPSFRSGKVIFDDMSSLPLSAYPSYMPYGDHYQNNFHNENVEFNVGQEVKQIPRCQTYKYFKNEDNYAVITSEISNQYQDSIGGTASFQGNMGNLNLKAEDISWPHAQTLIASEKQFGCVKREGGGKMIQHKLIDSHLSKGGTENFHVEEDPDVCIIEDISHPAPMSQSADIGNSLNITQSSRYVDSQSCMVGSTRVKACDERNILRVALQMWEYSSPIAHNSSVDLSQPKSELSPPEGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERSPLLNGCTNVPKSELETLNLDVDDDMLPQNGRVKEESNMGEDKSSTCPIKSMNLLMQAKGRPSAGTLIVCPTSVLRQWDDELHSKVTRQANLTVLLYHGSNRTKDPYEMAKYDVVLTTYSIVNMEVPKQPLVDKDDEERGNFEDHAVPSKKRKSPSSSSKSGKKRLDGTILEAGVRPLAKVAWFRIVLDEAHSIKNHKTQVARACCSLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISRNPAKGYRKLQAVLKTIMLRRTKGTFLDGEPIISLPPKHIELKKVEFSMEERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSKTLWRSSVEMAKKLPQEKQISLLKCLEASLALCGICNDPPEDAVVSICGHVFCNQCICEHLTGDDNQCTAANCKIQLSTSSVFSKATLNSCLSDQGCDNSPCCSGSEAEEFEPWSQSQPYDSSKIKAALEVLKSLRKPQCYTSKSISEKSTFRETNDCPGNPSDADNGKSFKDTPESQNLPEDRSSNDSVTVVGEKAIVFSQWTRMLDLLEGCLKNSSIQYRRLDGTMSVVARDKAIKDFNTLPEVSVIIMSLKAASLGLNLVVACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKMVASAFGEDGSGDRQSRLTVDDLKYLFMM 1367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12497g00004 1367 SUPERFAMILY RING/U-box 1049 1109 - -
Mupr12497g00004 1367 Gene3D - 587 674 IPR038718 -
Mupr12497g00004 1367 ProSitePatterns Zinc finger RING-type signature. 1066 1075 IPR017907 -
Mupr12497g00004 1367 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 818 947 - -
Mupr12497g00004 1367 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 597 935 IPR027417 -
Mupr12497g00004 1367 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 628 897 IPR014001 -
Mupr12497g00004 1367 Gene3D - 950 1367 IPR027417 -
Mupr12497g00004 1367 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 943 1366 IPR027417 -
Mupr12497g00004 1367 MobiDBLite consensus disorder prediction 1190 1206 - -
Mupr12497g00004 1367 SMART helicmild6 1226 1309 IPR001650 -
Mupr12497g00004 1367 ProSiteProfiles Zinc finger RING-type profile. 1051 1086 IPR001841 -
Mupr12497g00004 1367 SMART ultradead3 609 912 IPR014001 -
Mupr12497g00004 1367 MobiDBLite consensus disorder prediction 117 150 - -
Mupr12497g00004 1367 Pfam SNF2-related domain 633 1012 IPR000330 GO:0005524|GO:0140658
Mupr12497g00004 1367 Coils Coil 326 346 - -
Mupr12497g00004 1367 MobiDBLite consensus disorder prediction 789 810 - -
Mupr12497g00004 1367 Pfam Helicase conserved C-terminal domain 1210 1309 IPR001650 -
Mupr12497g00004 1367 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1203 1362 IPR001650 -
Mupr12497g00004 1367 CDD SF2_C_SNF 1212 1319 - -
Mupr12497g00004 1367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1044 1102 IPR013083 -
Mupr12497g00004 1367 MobiDBLite consensus disorder prediction 34 57 - -
Mupr12497g00004 1367 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 543 1366 - -
Mupr12497g00004 1367 CDD DEXDc_SHPRH-like 613 935 - -
Mupr12497g00004 1367 MobiDBLite consensus disorder prediction 789 824 - -
Mupr12497g00004 1367 Gene3D - 696 796 IPR038718 -
Mupr12497g00004 1367 Gene3D - 825 936 IPR038718 -
Mupr12497g00004 1367 MobiDBLite consensus disorder prediction 1170 1206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12497g00004 Mupr-Chr12497 35207 42580 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12497g00004 490 1366 RAD5 or RAD16-like Gene Family AT1G61140 57.901 0.0 952
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mupr12497g00004 SNF2_N 1.6e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12497g00004 - - gmx:100802436 2094.7