Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1248g00003 ATGGTCTGCGAGATGGAGAATGACTGTATAGAGGAGATGGACATTGAGGCCCTTCCTTCAATGTGGCCTGAAGATATTGGAACTGAGGTTGGAAAGCAGTTTAACATAGAAAAGGCTGGAAGGGACCAAGACATGTTAGAGGAGGTCACAATCATAGAGGAGGCAACTATAGTTGACTTCAAGCGTCTCATGGAGCTTACAAATTTTACAGAAAAGGGGTCTTCACAGTTGGCATACCTAATGAAACAATGGGAGTATAAGCAGGCCAATGTGGTGCGACTTCTCAGAGAAGAACTTGACAACTTGAGCAAACAAAGGCAGGATGTTGAGCTCAGGAAGTTGGAGATATTGGAAGAGCATCGATTCGAGGAAGAACGATATGGTGGTGATAAGCGCCCAGTATCTATATTGGATGATGTTTATGATGGTATATGGCATGATATACCTTGCAGGAAAAGTGATGTTGTGGTTCAGAACAAGAGGAGTGAGATTGATGCTGAATATGGTACTGTCATGTACTGGAAACAGCGAGCCTTGCATATAGAGAAGCAGCTGGAGGCAAGTATCCAAAGAGAACAGATACTTGAAGAGAAGTTGCAACTAAGTATAGCAAACATTGAAAGACAGTCCTCACCTGTGGAGGAACTCTCTCAAATCCTCAAGAGGGCAGATAATTTTTTGCATTTTATACTCCAAAATGCACCTGTTGTTATTGGCCATCAGGACAAAGACTTGCGCTATTGCTTTATCTATAATCATTTTCCAAGTTTACAAGAGGAGGACATCATAGGAAAAACTGATGTTGAAATATTCACGGGAGCTGGTGTTAAGGAATCTCAAGATTTTAAGAGAGAAGTTTTGGAAAAAGGATTACCTGCAAAAAGGGAAATCACTTTTGAGACAGAACTATTTGGGTCAAAGACATTTTTGATATATGTAGAACCTGTCTTTAGCAAGGCAGGGGAGACAATTGGAATAAATTACATGGGAATGGATATAACAGATCAGGTGAGAAAAAGAGAAAGGATGGCAAAGATTCGGGAAGAGATTGCTGTTCAGAAAGCCAAGGAAACAGAACTGAATAAAACCATTCACATTACAGAGGAAACTATGCGAGCAAAACAAATGCTGGCAACAATGTCTCATGAGATAAGATCTCCATTGTCTGGGGTTGTTAGCATGGCTGAAATTCTTTCTACCACAAAACTCGATTGGGAGCAAAGACAACTCTTGGATGTCATGCTATCTTCTGGAGATTTGGTTCTTCAACTTATAAATGACATACTTGATCTTTCCAAGGTTGAGTCAGGAGTGATGAAATTGGAAGCTACTAAATTCCGGCCAAGAGAGGTAGTCAAGCATGTACTCCAGACTGCTGCGGTTTCGTTGCAAAAAATATTAACCTTAGAAGGACATGTAGCAGATGATGTACCTATTGAGGTCATTGGTGATGTTTTAAGGATGCGGCAAATTCTTACAAATTTAATTAGCAACGCCATCAAGTTTACCCATGAAGGAAAAGTTGGGATAAACCTTTACGTTGTGCCAGAGCCTACTTTTGCAAAAGCAGAAGGCATCCAAATGATGATTCCAAACCAGTCGACTATTTCAGTGAATGGTGTGAAAGAAGAGAAATATGTCTCAACACCTCAAAGTGGCAGTGATCGAAATCTTAACCATGCATTCAATGATGAATGTAGATCACCAGTTAAAAGCGAATGCTCAATGAATGGAGACACTGAGGAGCAACCTCATTCAGCTGAAACAACAGTGTGGATACGTTGTGATGTATATGACACAGGCATAGGAATACCAGAAGATGCTATACCAACTTTGTTTAAAAGGTACATGCAAGTCAGTGCAGACCACGCTCGAAAGTATGGTGGCACAGGGCTAGGACTAGCAATATGCAAACAACTGGTTGAGTTGATGGGGGGTCGTTTAACAGTGTCTAGCAAAGAACACTATGGTTCTAAATTCACTTTCATACTCCCATACAAGGTTTCAATCGCTTGTGATAATTCTGATGAGCTCTCTGATGTGGAGAATAATGATGTTGCTTCTGATGATACAATAGATAGTTTCTTCCAATTCCAACCATGCACTTTGGGCTCACTATTCTCTTCTAATGGATCTAGTAGGACACAGAAGTTATTACCACACAAAATTAGCTACACCAGCTCACGTAAACTTGGTGGATTTTCTGAGAGTTTATATTCATTCCCCTCCAATGATATCATGTCAAAAGAGACATGTTCAGTTGATGATGTATCTTCAGTGGTTGATGTTGATGCTCCTGAGATGTCTGAATCAGCTAGTTCATCTGGTCACAGCCCAGAAACAAAGAACAAATGTGTAGTTATCAGAGATAAACAGCACCAAGATAAGGCTCATGCTTGGTCCCTGAATGGTTATGCAGATTCCTCTGAACCTACAGTGTCAAATAGAGAAATAGCTGTAGCAATAAAGTTAAGTGAACCCCAAACATGTCAGGGTCAAGGGAAGGCAAACACAAGCAGCAGTACATCAGAAGTAACCAAATCCACATTAAAGCCTAAGATCCTTCTTGTTGAAGATAACAAGATTAATGTCATGGTGACACAGTCCATGATGAAGCGATTAGGCCATAATATAGATGTTGTGAATAATGGAGTGGAAGCTGTACGTGCAGTTCAGCGCCACACTTATGACCTGGTTCTGATGGACGTCTGCATGCCAGTTATGAATGGTCTTCAAGCAACAAAACTGATTCGGTCTTTTGAGGAAACAGGCAATTGGGATGTTGCAAGAAATGCTGGAATCGAGCAAAGTCTATCAGATCCAGATTATGAATGTTCTGGACCATCTACAAAGCGGATCCCCATTGTTGCGATGACAGCAAATGCTTTGTCAGAGAGTGCTGAAGAGTGTTTTGCAAATGGTATGGACTCGTTTGTGTCAAAACCTGTGACTTTCCAAAAACTGAAAGAGTGTATTGAACAGTACTTAAGGAATCTCTTCTATTGA 3006 0.4069 MVCEMENDCIEEMDIEALPSMWPEDIGTEVGKQFNIEKAGRDQDMLEEVTIIEEATIVDFKRLMELTNFTEKGSSQLAYLMKQWEYKQANVVRLLREELDNLSKQRQDVELRKLEILEEHRFEEERYGGDKRPVSILDDVYDGIWHDIPCRKSDVVVQNKRSEIDAEYGTVMYWKQRALHIEKQLEASIQREQILEEKLQLSIANIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKDLRYCFIYNHFPSLQEEDIIGKTDVEIFTGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMDITDQVRKRERMAKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDWEQRQLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAVSLQKILTLEGHVADDVPIEVIGDVLRMRQILTNLISNAIKFTHEGKVGINLYVVPEPTFAKAEGIQMMIPNQSTISVNGVKEEKYVSTPQSGSDRNLNHAFNDECRSPVKSECSMNGDTEEQPHSAETTVWIRCDVYDTGIGIPEDAIPTLFKRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVSSKEHYGSKFTFILPYKVSIACDNSDELSDVENNDVASDDTIDSFFQFQPCTLGSLFSSNGSSRTQKLLPHKISYTSSRKLGGFSESLYSFPSNDIMSKETCSVDDVSSVVDVDAPEMSESASSSGHSPETKNKCVVIRDKQHQDKAHAWSLNGYADSSEPTVSNREIAVAIKLSEPQTCQGQGKANTSSSTSEVTKSTLKPKILLVEDNKINVMVTQSMMKRLGHNIDVVNNGVEAVRAVQRHTYDLVLMDVCMPVMNGLQATKLIRSFEETGNWDVARNAGIEQSLSDPDYECSGPSTKRIPIVAMTANALSESAEECFANGMDSFVSKPVTFQKLKECIEQYLRNLFY 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1248g00003 1001 Coils Coil 92 119 - -
Mupr1248g00003 1001 SMART HisKA_10 372 437 IPR003661 GO:0000155|GO:0007165
Mupr1248g00003 1001 SUPERFAMILY CheY-like 852 997 IPR011006 -
Mupr1248g00003 1001 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 437 IPR036097 GO:0000155|GO:0007165
Mupr1248g00003 1001 Gene3D - 846 997 - -
Mupr1248g00003 1001 CDD REC_hyHK_CKI1_RcsC-like 854 992 - -
Mupr1248g00003 1001 CDD HisKA 371 433 IPR003661 GO:0000155|GO:0007165
Mupr1248g00003 1001 SMART HKATPase_4 483 668 IPR003594 -
Mupr1248g00003 1001 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 426 666 IPR036890 -
Mupr1248g00003 1001 Pfam His Kinase A (phospho-acceptor) domain 374 437 IPR003661 GO:0000155|GO:0007165
Mupr1248g00003 1001 Coils Coil 189 209 - -
Mupr1248g00003 1001 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 483 666 IPR003594 -
Mupr1248g00003 1001 SMART REC_2 852 992 IPR001789 GO:0000160
Mupr1248g00003 1001 SUPERFAMILY PYP-like sensor domain (PAS domain) 217 334 IPR035965 -
Mupr1248g00003 1001 ProSiteProfiles Response regulatory domain profile. 853 996 IPR001789 GO:0000160
Mupr1248g00003 1001 Gene3D - 438 671 IPR036890 -
Mupr1248g00003 1001 Gene3D PAS domain 214 349 - -
Mupr1248g00003 1001 FunFam Histidine kinase 5 846 997 - -
Mupr1248g00003 1001 Pfam Response regulator receiver domain 854 921 IPR001789 GO:0000160
Mupr1248g00003 1001 ProSiteProfiles Histidine kinase domain profile. 379 668 IPR005467 -
Mupr1248g00003 1001 CDD HATPase_EvgS-ArcB-TorS-like 488 665 - -
Mupr1248g00003 1001 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 44 996 - -
Mupr1248g00003 1001 FunFam Histidine kinase 5 214 349 - -
Mupr1248g00003 1001 FunFam Putative histidine kinase 5 360 437 - -
Mupr1248g00003 1001 Gene3D - 360 437 - -
Mupr1248g00003 1001 PRINTS Bacterial sensor protein C-terminal signature 652 665 IPR004358 GO:0016310|GO:0016772
Mupr1248g00003 1001 PRINTS Bacterial sensor protein C-terminal signature 593 607 IPR004358 GO:0016310|GO:0016772
Mupr1248g00003 1001 PRINTS Bacterial sensor protein C-terminal signature 628 646 IPR004358 GO:0016310|GO:0016772
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1248g00003 Mupr-Chr1248 9299 14826 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1248g00003 1 996 Histidine Kinase Gene Family AT5G10720 58.077 0.0 1115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mupr1248g00003 HATPase_c 3.5e-27 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1248g00003 - - gmx:100819520 1734.15