Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12475g00001 ATGTCACCGAGCTTCGTCTTCGACCCTCCCAGCGACGAAGAAATCGAACACTCCGAACGCGAAGAAGAATCAGAAGAATCAAAAGAAGCCGAGACAGGATCAGATTCAGAATCAGAAGAAGAAGAAGAAGAAGAAGAGGAGCACAAAGAAGCGCGGGTTTCGAAGAAGAAAACACAGTCTCCATGGGACTTCGCTAAGTACACAGAGTCAGTGGCCGAGGAACACGCTCGCAGGAGCACAACCTCGGTCGACGAGAAAATCTCCAAAGCACTCAGACAACGTTCCACGTCGCTTGTTGCTGCGCCCGACCACAGCTCCGAGTCCGAACCTGATGAACAAAGGAAGTGGTTCGCTGTTTCGGAAGTTGCTCTTGAAGATTATAGACCGGAGGAAGAAGATGAAGAAGAGGGTAATGGTGGAGATAACAAGTCCTTTTTTGCTCCTTCTGATGGAACTTCTTTCCATGCCGATTCCTTCTTGCAGCTCAATTTGTCTCGCCCTTTACTCCGGGCTTGTGAGGCCTTGGGTTATGCTAAACCAACGCCAATTCAGGCAGCATGTATTCCGTTGGGGTTGACTGGTCGTGATATATGTGGAAGTGCCATTACTGGGTCAGGGAAGACAGCTGCATTTGCACTACCTACTTTAGAGAGGTTGTTATTCCGTCCAAAGCGCATGCGTGCAATAAGGGTCCTCATTCTTACTCCAACCAGAGAGTTGGCAGTCCAAGTGCACAGTATGATAGAAAAGCTTGCTCAATTTACTGATATAAGGTGTTGCCTGGTTGTTGGGGGTCTGTCAACAAAGGTGCAAGAGGCTGCTTTGAGATCAATGCCAGACATTGTTGTGGCTACTCCAGGACGCATGATAGACCATTTACGCAATTCTATGTCTGTTGATTTGGATGATCTTGCTGTTCTAATCCTTGATGAGGCAGATCGTCTTTTGGAGCTTGGATTTAATGCTGAAATTCAAGAACTTGTTCGTCTGTGCCCCAAAAAAAGGCAGACTATGCTGTTTTCAGCAACAATGACCGAGGAGGTGGATGAACTTATTAAACTTTCCCTGTCAAAGCCCTTACGTCTTTCTGCTGACCCATCTACAAAACGGCCAGCAACCTTGACTGAGGAGGTTGTTAGAATACGAAGAATGCGTGAAGTAAATCAGGAAGCAGTTCTTCTTGCAATGTGCTCCAAAACTTTTACTTCCAAAGTCATCATCTTCAGTGGAACAAAGCAAGCTGCACATAGGTTGAAGATTATATTTGGATTAGCTGGCTTAAAAGCTGCTGAGCTTCATGGAAATCTTACTCAAGCCCAGCGCCTTGAAGCTTTGGAACTGTTTAGGAAGCAGCAAGTAGATTTTTTGGTTGCAACAGATGTGGCTGCCCGTGGTCTTGACATTATTGGTGTTCAAACAGTTATCAACTTTGCATGTCCACGTGATCTTACCAGCTATGTTCATCGAGTGGGTCGTACTGCAAGAGCTGGAAGAGAAGGATATGCCGTCACTTTTGTGACTGACAATGACCGATCACTTTTGAAAGCCATTGTGAGTATCATTCGAAGAATTGCTGCATCTGTCGCAAAGAGGGCTGGGTCAAAGCTAAGAAGTCGCATTGTTGCTGAGCAATCTATACTTAAGTGGTCTAATATAATTGAGCAAATGGAGGATCAAATTGATGAAGTACTTCAAGAAGAGAGAGAAGAAAGAGTCCTAAGGAAAGCTGAAATGGAGGCCACAAAGGCTGAAAACATGATTGCACATAGGGAAGAGATCTTTTCCCGTCCTAAAAGAACCTGGTTTGTCACAGAGAAGGAAAAAAAGCTTGCTGCAAAAGCAACCAAGGCATCCATGGACAAGAACAAGAGTTCTGGGAAAGAGGTAATTAGTGCTGAACAAGCTGAGGACCTAAAAATGAAGGAAAAGAGGAAGCGAGAGCGAGAGAAACATTTACCTAGAAAGAAGCGTAGAAAGTTGGAAGCGGCTAGAGAGATGTTGGAGGATGAGGAGCAGGACGGCAAACAAGTAGAGGCTAAGGCTAAGGGGACCAATAAAAAGGAAAAGGGTGGAATGTCACTTGTTGATCTTGCTTACCGACGAGCAAAAGCAGTGAAGGCTGTCAAGAAGGCATTAGATTCTGGCAAGATTGTGAAGAAGAGTAATAAGAAATCTAATCATACTTCCCGAAAAACTCCTTCAAGGACAGCAGAGATGCGGGAGCTATTCCAGACTGACATGAAGGATAAAAAGCCAAAAAGAAGAGGTGTTGGAGGAAAGAAAAAGAGTTCATTCAAAAGCAAGTCAAGAATGAATTAA 2319 0.4472 MSPSFVFDPPSDEEIEHSEREEESEESKEAETGSDSESEEEEEEEEEHKEARVSKKKTQSPWDFAKYTESVAEEHARRSTTSVDEKISKALRQRSTSLVAAPDHSSESEPDEQRKWFAVSEVALEDYRPEEEDEEEGNGGDNKSFFAPSDGTSFHADSFLQLNLSRPLLRACEALGYAKPTPIQAACIPLGLTGRDICGSAITGSGKTAAFALPTLERLLFRPKRMRAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKVQEAALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFNAEIQELVRLCPKKRQTMLFSATMTEEVDELIKLSLSKPLRLSADPSTKRPATLTEEVVRIRRMREVNQEAVLLAMCSKTFTSKVIIFSGTKQAAHRLKIIFGLAGLKAAELHGNLTQAQRLEALELFRKQQVDFLVATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIVSIIRRIAASVAKRAGSKLRSRIVAEQSILKWSNIIEQMEDQIDEVLQEEREERVLRKAEMEATKAENMIAHREEIFSRPKRTWFVTEKEKKLAAKATKASMDKNKSSGKEVISAEQAEDLKMKEKRKREREKHLPRKKRRKLEAAREMLEDEEQDGKQVEAKAKGTNKKEKGGMSLVDLAYRRAKAVKAVKKALDSGKIVKKSNKKSNHTSRKTPSRTAEMRELFQTDMKDKKPKRRGVGGKKKSSFKSKSRMN 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12475g00001 772 MobiDBLite consensus disorder prediction 68 91 - -
Mupr12475g00001 772 MobiDBLite consensus disorder prediction 15 47 - -
Mupr12475g00001 772 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 229 517 IPR027417 -
Mupr12475g00001 772 MobiDBLite consensus disorder prediction 731 753 - -
Mupr12475g00001 772 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 34 730 - -
Mupr12475g00001 772 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 188 362 IPR014001 -
Mupr12475g00001 772 Gene3D - 127 363 IPR027417 -
Mupr12475g00001 772 Pfam DEAD/DEAH box helicase 181 351 IPR011545 GO:0003676|GO:0005524
Mupr12475g00001 772 MobiDBLite consensus disorder prediction 754 772 - -
Mupr12475g00001 772 CDD SF2_C_DEAD 374 506 - -
Mupr12475g00001 772 SMART helicmild6 412 497 IPR001650 -
Mupr12475g00001 772 Pfam Helicase conserved C-terminal domain 394 497 IPR001650 -
Mupr12475g00001 772 MobiDBLite consensus disorder prediction 613 644 - -
Mupr12475g00001 772 SMART ultradead3 176 377 IPR014001 -
Mupr12475g00001 772 MobiDBLite consensus disorder prediction 659 689 - -
Mupr12475g00001 772 Coils Coil 632 652 - -
Mupr12475g00001 772 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 308 316 IPR000629 -
Mupr12475g00001 772 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 157 185 IPR014014 GO:0003724
Mupr12475g00001 772 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 373 537 IPR001650 -
Mupr12475g00001 772 CDD DEADc_DDX27 168 363 - -
Mupr12475g00001 772 MobiDBLite consensus disorder prediction 127 147 - -
Mupr12475g00001 772 Coils Coil 660 687 - -
Mupr12475g00001 772 MobiDBLite consensus disorder prediction 1 115 - -
Mupr12475g00001 772 Gene3D - 364 536 IPR027417 -
Mupr12475g00001 772 Coils Coil 546 586 - -
Mupr12475g00001 772 MobiDBLite consensus disorder prediction 710 772 - -
Mupr12475g00001 772 MobiDBLite consensus disorder prediction 613 691 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12475g00001 Mupr-Chr12475 5167 13467 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12475g00001 145 514 Eukaryotic Initiation Factors Gene Family AT3G13920 33.512 2.65e-50 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12475g00001 K13181 - gmx:100776684 1142.49