Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12472g00001 ATGAGTTTCAACATTGCTTCATCATTGGACCATAACCAAGACCGAAGTAAAAAGCGAAAGCAACCCGATTCTCCAAACCTGGAATTATCGTGTTCCAACATGACACCCAGAAGGTATCAGATAGAGGTTTTTGAAGTTGCAAAGAGAAGGAACACAATAGCAGTGTTGGATACAGGCTCTGGCAAGACCTTGATTGCTGTGATGCTTATGAAAGAGGTTGGCCATGCCATCAAGACTACTGGTGTAAAGAAGCTCATTGTTTTCTTAGCTCCCACAGTTCATCTTGTCAATCAGCAATTCAAGAATATAAAAGAACTGACAGATTTTCAAGTTGGGGAATGTTATGGGGCTAAAGGAGTTGATTCATGGAATTCGAAGGCGTGGGAGAAGGCGATTAGTAACCATGATGTCATGGTTATGACACCTCAGGTTCTTTTGGATGCCTTTAGAAAGAAAACTGTGTGTATAGAAATGATATGCTTGATGGTTATTGATGAATGTCATAGAGCAACGGGCAACCATCCCTATGCAAGAATAATGAAGGAATTTTATCACCAAGCTATTGAAAAGCCAAAGATTTTTGGGATGACAGCATCGCCAGTGATTAAAAAAGGTGTTTCTTCTTCTATGGATTGCGAGAATCAAATATCACAACTTGAAAAAACCTTGGATTCTCAGAGATATACTGTTGAAGATCGGTCAGAGATCGATCAATGTATCCCATCTGCTAAACATTGCTGTAGATTTTATGACCAAGCACGAGTTTCCGCTTTGAGTTTGAAACCAAAGATTGAAGCCTTGTGGTTCAAGTTTGATGCATTGTTATCAGAAAATCAAAGAAACTTTAAGGATGTGGATGGTAAATTTAAGATGCTGTCTCGGCGGATGTCCAGTGAACATGCAAAGATTTTGCATTGTCTTGAAGATCTTGGGATCCTATGTGCTTATGAGGCTGTTAAAATCTGTCATGACAATTTCTCCAAAATTGAAGGAGAATGTGAAATTTACAGAAAAGGTTATCTTCAGTGTATAACTTTTGTTGAAGAAATAATGAAAATAATCGAAGAATCCCTCCATCTTGCTGATAAAAATATTTTGGAGGTTGATTTTGATTATTCCAAGGCAGAAGATTTGGGTTACATATCTCCAAAATTACTTGAACTTATTAACGTCTTCCAGTCATTTGGAGAATCTAGTAAGGTGTTGTGCCTTATTTTTGTTGATAGAATAATTACTGCTAAGGTGATTGAAAGATTCGCAAAGCAAGTTCCCCAGATTTCTCATTTCACTGTTTCCTATTTAACTGGAAACACTACATCAGTAGATGCTCTGTCTCCAAAGAGGCAGAAGGAGATATTGGATTCTTTCCGCTCCGGAAAGGTCAATCTACTATTTACTACTGACGTACTTGAGGAAGGAATTCATGTGCCAAACTGCTCTTGCGTGATACGTTTTGATTTGCCAAAGACAGTTCGTAGTTATGTCCAATCTCGAGGAAGATCTAGGCAGGCTAACTCCCAATATGTTCTGATGTTGGAGAGGCAATGTGTTTGTGTGTTGTACACTCGTCGTATCTACAGGGGAAACTTGAAGCAAAGAAATCAACTCTTTGACATCCTTAGGAGTGAGCGCTCCATGACTGATGCATCTACTTATAAAGACCATGAATCTAGTTTAAGGGTGCTTACAATGGAAAAAACAAACGCATACTATGTGGAATCTACTGGAGCGTCTGTCACTTTAGATTCTAGTGTTGGTCTTATCAACCTATACTGTGAAAAGCTCCCACGAGATAAGTACTCCTGTGCAAAGCCCAGTTTTGCGTTTATGCCTGTGGAAGGTGGTTTCCAATGTGAGTTAATATTACCACCTAATGGAGCTTTCCAAACAATAATTGGTCCTTCAGGAATAGATATTCGTTTGGCAAGGTATCTTGCATGTTTCGAAGCTTGTAAGAAGCTGCATCAAATGGGCGCCTTAAATGATTATCTGGTTCCATTCATTGAAGATCCTTCAGAAGATGAACATATTGTGAAAAACAAAGAATCAAGTTCTGGTGCAGGAACCACAAAAAGAAAGGAGTTGCATGGAACAGCCAACGTTCGTGCATTAGGTGGTGCATGGGGAGACAAACATGATGGAGTCAAATTTTATGCCTATAAATTTGAATTCACATGTAATATTGTTAGTATAATGTACTCTGGGTTTGTTCTTTTGATTGAATCAAAGCTTGCCGATGATGTGGGAAATGTAGAATTAGATCTTTATTTAGTCTCACAGATCGTGAAAGCATCTGTCTCTTCGTATGGGCAAGTTTATTTGGATGCTGAACAGATGATGAAAGCAAAATGCTTCCATGAGCTTTTGTTCAATGGTTTGTTCGGGAGATTGATTGTTAGGTCCAAATCAGCAGCAGGGGAAATGGAATTTTTACTTCAGAAAGACACAAAATCTTTGTGGAGCCCAAAACACTTATATTTGCTTCTACCACTTGATACCTATGAGGGATCCTTGCAAATAAATTGGCGTGGAATCAATTCTTGTGCTGCTGCTATTGAATTTTTAAGGAGGAAAATTTCTATGGTCACTGGAGATTTTGATGATAACGGCACCATCACAACACATCATAATACCAGTTCATCGGAGATGGAATGTGAAGGAACGAACAAGATTCACTTTGCTAATTGTGTGGTTGATGCTGATAATATAAAAGACATGGTAGTTTTGGCCATTCACACTGGGAAAATATATTGTATTATTGAGATGGACGGTAACCTGTCTGCTGAAAGTCCTTTCGATGGATACAATGAAAAATCGATGGAATGCATTACCTTCTCGGATTATTTCAGCAAAAGGTATGGGATTACACTGAGACATCCAGGACAGCCTCTGTTACGATTGAAGCAAAGTCATAATCCACACAATCTTCTTTTTAACTTTCACGAGGAAGATGCGCGAGACAAGTCATCACAAATTGGCCCCGCAACCTCAAAAGTGCCAGTGCATGTTCACATTCCACCTGAGCTTCTATACGTTCTTGATATTAAAAGAGATGTGTTGACGACACTTTACTTGCTGCCATCTCTGATGCATCGCATTCAATCTTTAATGTTATCCAGTCAGCTTAGAGAAGAGATAGATGGTCAAACTAGCAAGTTCAACATACGTAGCTCACTGGTTTGTCCTATATATGATTTTTGGATAAAATATTCATTGATTGTTGATTTCTATTTTCACTATGATTCTAGAAGCACTTACAACTTTGAGATGTAG 3273 0.3862 MSFNIASSLDHNQDRSKKRKQPDSPNLELSCSNMTPRRYQIEVFEVAKRRNTIAVLDTGSGKTLIAVMLMKEVGHAIKTTGVKKLIVFLAPTVHLVNQQFKNIKELTDFQVGECYGAKGVDSWNSKAWEKAISNHDVMVMTPQVLLDAFRKKTVCIEMICLMVIDECHRATGNHPYARIMKEFYHQAIEKPKIFGMTASPVIKKGVSSSMDCENQISQLEKTLDSQRYTVEDRSEIDQCIPSAKHCCRFYDQARVSALSLKPKIEALWFKFDALLSENQRNFKDVDGKFKMLSRRMSSEHAKILHCLEDLGILCAYEAVKICHDNFSKIEGECEIYRKGYLQCITFVEEIMKIIEESLHLADKNILEVDFDYSKAEDLGYISPKLLELINVFQSFGESSKVLCLIFVDRIITAKVIERFAKQVPQISHFTVSYLTGNTTSVDALSPKRQKEILDSFRSGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRSRQANSQYVLMLERQCVCVLYTRRIYRGNLKQRNQLFDILRSERSMTDASTYKDHESSLRVLTMEKTNAYYVESTGASVTLDSSVGLINLYCEKLPRDKYSCAKPSFAFMPVEGGFQCELILPPNGAFQTIIGPSGIDIRLARYLACFEACKKLHQMGALNDYLVPFIEDPSEDEHIVKNKESSSGAGTTKRKELHGTANVRALGGAWGDKHDGVKFYAYKFEFTCNIVSIMYSGFVLLIESKLADDVGNVELDLYLVSQIVKASVSSYGQVYLDAEQMMKAKCFHELLFNGLFGRLIVRSKSAAGEMEFLLQKDTKSLWSPKHLYLLLPLDTYEGSLQINWRGINSCAAAIEFLRRKISMVTGDFDDNGTITTHHNTSSSEMECEGTNKIHFANCVVDADNIKDMVVLAIHTGKIYCIIEMDGNLSAESPFDGYNEKSMECITFSDYFSKRYGITLRHPGQPLLRLKQSHNPHNLLFNFHEEDARDKSSQIGPATSKVPVHVHIPPELLYVLDIKRDVLTTLYLLPSLMHRIQSLMLSSQLREEIDGQTSKFNIRSSLVCPIYDFWIKYSLIVDFYFHYDSRSTYNFEM 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12472g00001 1090 FunFam Endoribonuclease dicer-like 1 579 675 - -
Mupr12472g00001 1090 Pfam Helicase conserved C-terminal domain 398 501 IPR001650 -
Mupr12472g00001 1090 SUPERFAMILY PAZ domain 900 1014 IPR036085 GO:0005515
Mupr12472g00001 1090 Pfam Type III restriction enzyme, res subunit 40 200 IPR006935 GO:0003677|GO:0005524|GO:0016787
Mupr12472g00001 1090 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 584 674 IPR005034 GO:0016891
Mupr12472g00001 1090 FunFam Endoribonuclease dicer-like protein 31 269 - -
Mupr12472g00001 1090 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 84 510 IPR027417 -
Mupr12472g00001 1090 ProSiteProfiles PAZ domain profile. 900 1014 IPR003100 GO:0005515
Mupr12472g00001 1090 SMART PAZ_2_a_3 880 1038 IPR003100 GO:0005515
Mupr12472g00001 1090 FunFam Endoribonuclease dicer-like 1 375 551 - -
Mupr12472g00001 1090 Gene3D - 30 266 IPR027417 -
Mupr12472g00001 1090 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 43 218 IPR014001 -
Mupr12472g00001 1090 FunFam Dicer-like 104 891 1011 - -
Mupr12472g00001 1090 Pfam PAZ domain 899 1034 IPR003100 GO:0005515
Mupr12472g00001 1090 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 384 560 IPR001650 -
Mupr12472g00001 1090 PANTHER DICER-RELATED 50 1059 - -
Mupr12472g00001 1090 Gene3D - 375 523 IPR027417 -
Mupr12472g00001 1090 SMART ultradead3 32 231 IPR014001 -
Mupr12472g00001 1090 MobiDBLite consensus disorder prediction 1 31 - -
Mupr12472g00001 1090 Pfam Dicer dimerisation domain 584 669 - -
Mupr12472g00001 1090 CDD DEXHc_dicer 34 232 - -
Mupr12472g00001 1090 SMART helicmild6 417 504 IPR001650 -
Mupr12472g00001 1090 Gene3D paz domain 886 1012 - -
Mupr12472g00001 1090 Gene3D Dicer dimerisation domain 579 677 IPR038248 -
Mupr12472g00001 1090 CDD SF2_C_dicer 380 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12472g00001 Mupr-Chr12472 24 9848 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12472g00001 428 501 Eukaryotic Initiation Factors Gene Family AT3G19760 39.189 3.02e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12472g00001 K11592 - gmx:100806831 1729.15