Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12460g00002 ATGGTATGTGCAAGATCGGGGCAGTTTAGTAATTTCTGGATTTCTGTAGACCTCATGGCTTACACGATCTTTATCTTTCTTCCAATCGCATGCTCCAATCAATTTCCCAATTCCACCTCGCAGAACCCTCGATCCACTTCCTCTCTTCCAATTGCACCCAGCGATAAGAGACACTTTCAATTCGATCCACTAACTTTCCCTCGCCGAGAATTCCTCTGCTTCTGGAACCTTCGATCCATGGACGTGGACGGGGGGAACAAGCGCGTGTACAACCGCCTCGGTGCGGACGCGAAGCAGCAGAAGGTGTGCTTCCACTGGCAAGCGGGCAAGTGCAACCGCCACCCGTGCGCCTTTCTGCACAGCGAATTGCCAGCTGCCCACGCCAACGGAACCTCCTCCAAGCGCGTCTACGACAATTCGGGCCTTTCCGGTCCGCGCCGCGGCCCCAATTTCAACAACACGTGGGGCCGCGGTGGCGGCCGTGGCGGTGGTGGCGGCCGCGGTGGCGGTAGAGGGGTGTCTGTGAAGGTGGATAAAGATAAAGTCTGTAATTATTTCATTCAGGGGAATTGTAGTTTTGGAGAGAGGTGTAAGTTTCTTCACTCTTGGAGTATAGGGGATGGCTTTTCTTTGCTGACCCAGCTCGAAGGGCATCAAAAGGCTGTGAGTGCGATTGCCTTTCCCTCTGGTTCGGATAAGCTTTATACAGGAAGTACTGACGAGACTGCAAGGATTTGGGACTGCCAGTCTGGAAAGTTTCCTTTTGAGCTTGTTGAAAAGGTGAGGTTGATCTTGTTTTTGTTTGTCTATACTCCTTTGCAGTGTATTAGTGTGATCAATCTTGGTGGTGAAGTAGGTTGTATGATCAGTGAGGGCCCCTGGGTTTTTGTTGGGATACCCAATTTAGTCAAGGCCTGGAACACACAAAATTTAATGGAGCTAAGTCTAAATGGTCCTGTTGGACAAGTTTATGCACTTGTTGTGAATAATGATATGCTTTTTGCCGGTACACAGGATGGATCTATATTGGCATGGAAGTTTAATGTAGTTACCAACTGCTTTGAACCAGCTGCATCACTTAAAGGTCATTCTCGTAGTGTTGTTTCATTAGTTGTTGGTGCTAACAGACTTTACTCTGGTTCAATGGATAATACAATAAGGGTATGGAACCTTGAAACCTTGCAGTGTTTACAGACACTAACAGAGCACACATCTGTTGTGATGTCTGTTCTCTGCTGGGACCAATTCCTTTTATCTTGTTCATTGGACAAAACAGTGAAGGTATGGTATGCTACAGAAAGTGGAAACTTAGAAGTGACATATACTCACAATGAAGAACATGGTATACTTACCCTATGTGGGATGCATGATTCACAAGGCAAGCCCATTTTGCTGTGTGCTTGCAATGATAATACTGTGCACCTCTATGATCTGCCATCATTTGCAGAGAGGGGCAAGATACTCACAAAACAAGAGGTACGAGCAATGCAGATAGGGCCTAATGGTATATTCTTCACCGGTGACGGTACTGGTGAAGGAATTCAGACTGAGGTTGGGACTGGGAAGAGGCAGAAAAAGGGAGCCATCAAAAGGGTCATGCTATAA 1605 0.4717 MVCARSGQFSNFWISVDLMAYTIFIFLPIACSNQFPNSTSQNPRSTSSLPIAPSDKRHFQFDPLTFPRREFLCFWNLRSMDVDGGNKRVYNRLGADAKQQKVCFHWQAGKCNRHPCAFLHSELPAAHANGTSSKRVYDNSGLSGPRRGPNFNNTWGRGGGRGGGGGRGGGRGVSVKVDKDKVCNYFIQGNCSFGERCKFLHSWSIGDGFSLLTQLEGHQKAVSAIAFPSGSDKLYTGSTDETARIWDCQSGKFPFELVEKVRLILFLFVYTPLQCISVINLGGEVGCMISEGPWVFVGIPNLVKAWNTQNLMELSLNGPVGQVYALVVNNDMLFAGTQDGSILAWKFNVVTNCFEPAASLKGHSRSVVSLVVGANRLYSGSMDNTIRVWNLETLQCLQTLTEHTSVVMSVLCWDQFLLSCSLDKTVKVWYATESGNLEVTYTHNEEHGILTLCGMHDSQGKPILLCACNDNTVHLYDLPSFAERGKILTKQEVRAMQIGPNGIFFTGDGTGEGIQTEVGTGKRQKKGAIKRVML 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12460g00002 534 SMART WD40_4 434 477 IPR001680 GO:0005515
Mupr12460g00002 534 SMART WD40_4 309 346 IPR001680 GO:0005515
Mupr12460g00002 534 SMART WD40_4 353 390 IPR001680 GO:0005515
Mupr12460g00002 534 SMART WD40_4 393 430 IPR001680 GO:0005515
Mupr12460g00002 534 SMART WD40_4 208 247 IPR001680 GO:0005515
Mupr12460g00002 534 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 215 247 - -
Mupr12460g00002 534 Pfam WD domain, G-beta repeat 211 247 IPR001680 GO:0005515
Mupr12460g00002 534 Pfam WD domain, G-beta repeat 395 429 IPR001680 GO:0005515
Mupr12460g00002 534 Pfam WD domain, G-beta repeat 356 390 IPR001680 GO:0005515
Mupr12460g00002 534 PANTHER - 175 512 IPR044715 -
Mupr12460g00002 534 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 360 393 - -
Mupr12460g00002 534 SUPERFAMILY WD40 repeat-like 201 511 IPR036322 GO:0005515
Mupr12460g00002 534 Gene3D - 303 531 IPR015943 GO:0005515
Mupr12460g00002 534 Pfam CCCH-type zinc finger 181 201 IPR041367 -
Mupr12460g00002 534 ProSiteProfiles Trp-Asp (WD) repeats profile. 215 256 IPR001680 GO:0005515
Mupr12460g00002 534 ProSiteProfiles Trp-Asp (WD) repeats profile. 360 399 IPR001680 GO:0005515
Mupr12460g00002 534 MobiDBLite consensus disorder prediction 130 150 - -
Mupr12460g00002 534 Gene3D - 203 277 IPR015943 GO:0005515
Mupr12460g00002 534 ProSiteProfiles Zinc finger C3H1-type profile. 178 204 IPR000571 GO:0046872
Mupr12460g00002 534 MobiDBLite consensus disorder prediction 130 172 - -
Mupr12460g00002 534 ProSitePatterns Trp-Asp (WD) repeats signature. 377 391 IPR019775 -
Mupr12460g00002 534 ProSiteProfiles Zinc finger C3H1-type profile. 97 123 IPR000571 GO:0046872
Mupr12460g00002 534 PRINTS G protein beta WD-40 repeat signature 234 248 IPR020472 -
Mupr12460g00002 534 PRINTS G protein beta WD-40 repeat signature 377 391 IPR020472 -
Mupr12460g00002 534 PRINTS G protein beta WD-40 repeat signature 417 431 IPR020472 -
Mupr12460g00002 534 SMART c3hfinal6 179 203 IPR000571 GO:0046872
Mupr12460g00002 534 SMART c3hfinal6 98 122 IPR000571 GO:0046872
Mupr12460g00002 534 FunFam Zinc finger CCCH domain-containing protein 48 317 522 - -
Mupr12460g00002 534 Gene3D - 175 202 - -
Mupr12460g00002 534 SUPERFAMILY CCCH zinc finger 179 202 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12460g00002 Mupr-Chr12460 6190 13160 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12460g00002 206 401 Eukaryotic Initiation Factors Gene Family AT2G46290 26.829 1.01e-10 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mupr12460g00002 WD40 0.00012 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12460g00002 - - gmx:100775542 739.569