Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12452g00001 ATGGGTCGTTCTCGTGGGAATTTTCACCACGCCGATGAGGACCCCAACCAGAGGTCAAGGAGGAAAAAGAATCCTGCCAGCGGAGATAATTCAGAATCTGGAGCTGCAGGCCAAGGAGCAGGTGAAGGGAAAAAGGCTCTGTACCACTGCAATTATTGTAATAAAGATATAACGGGAAAAATCCGTATTAAGTGTGCCATGTGCCCAGATTTTGACTTGTGTATAGAGTGTTTTTCTGTTGGAGCTGAGGTGACACCTCATAAAAGCAACCACCCTTACAGGGTTATGGATAATTTGTCTTTCCCTCTTATTTGCCCAGACTGGAATGCAGATGATGAAATTTTGCTTCTAGAGGGAATTGAAATGTATGGCTTGGGAAACTGGGCAGAAGTTGCTGAGCATGTTGGTACCAAAAACAAAGAATCATGCATAGAACACTATAGGAACGTATACTTGAATTCCCCATTCTTTCCTGTTCCGGATATGTCTCATGTTGTTGGGAAAAACAGAAAAGAACTTCTTGCCATGGCGAAAGGGCAGGGTGAAGACAAGAAAGATTCCCATAAAGCTGGCTCCGCTAACCGTTTGCCTTCCAGTTTGAATTCA 606 0.4389 MGRSRGNFHHADEDPNQRSRRKKNPASGDNSESGAAGQGAGEGKKALYHCNYCNKDITGKIRIKCAMCPDFDLCIECFSVGAEVTPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWAEVAEHVGTKNKESCIEHYRNVYLNSPFFPVPDMSHVVGKNRKELLAMAKGQGEDKKDSHKAGSANRLPSSLNS 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12452g00001 202 MobiDBLite consensus disorder prediction 1 42 - -
Mupr12452g00001 202 CDD SANT 108 150 IPR001005 -
Mupr12452g00001 202 SMART sant 104 153 IPR001005 -
Mupr12452g00001 202 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 48 197 - -
Mupr12452g00001 202 MobiDBLite consensus disorder prediction 1 27 - -
Mupr12452g00001 202 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 155 IPR017930 -
Mupr12452g00001 202 ProSiteProfiles Myb-like domain profile. 108 151 IPR001005 -
Mupr12452g00001 202 SUPERFAMILY RING/U-box 48 111 - -
Mupr12452g00001 202 FunFam Transcriptional adapter 41 96 - -
Mupr12452g00001 202 MobiDBLite consensus disorder prediction 177 191 - -
Mupr12452g00001 202 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Mupr12452g00001 202 SMART zz_5 44 89 IPR000433 GO:0008270
Mupr12452g00001 202 SUPERFAMILY Homeodomain-like 100 154 IPR009057 -
Mupr12452g00001 202 Gene3D - 102 153 - -
Mupr12452g00001 202 Pfam Zinc finger, ZZ type 46 88 IPR000433 GO:0008270
Mupr12452g00001 202 ProSitePatterns Zinc finger ZZ-type signature. 50 77 IPR000433 GO:0008270
Mupr12452g00001 202 CDD ZZ_ADA2 48 96 IPR041983 -
Mupr12452g00001 202 Gene3D - 40 96 IPR043145 -
Mupr12452g00001 202 MobiDBLite consensus disorder prediction 177 202 - -
Mupr12452g00001 202 ProSiteProfiles SANT domain profile. 103 155 IPR017884 -
Mupr12452g00001 202 Pfam Myb-like DNA-binding domain 107 150 IPR001005 -
Mupr12452g00001 202 FunFam Transcriptional adapter 2 101 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12452g00001 Mupr-Chr12452 3492 6158 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12452g00001 1 178 EF-hand Containing Proteins AT3G07740 54.787 7.30e-66 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mupr12452g00001 Myb_DNA-binding 3.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12452g00001 K11314 - gmx:100815514 405.601