Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12437g00003 ATGGTTAGAGACGATCTATTCATCACCGTTCCCAGCTTCTTCCGGTGCCCCATATCCCTCGACGTCATGAAATCCCCTGTCAGCCTCTCCACCGGCGTTACCTACGACCGCTCCAGCATCCAACGCTGGCTCGACAACGGAAATAACACGTGTCCCGCCACCATGCAGGTTCTCCAAACCAAAGACTTCGTTCCTAACCGGACCTTACAGAGGCTCATCCAGATCTGGTCCGACTCGGTCCGTCACCGAGTCGACTCGCCCGAGTCCCCCGCCTCCACCGAGTCCGTCCTCTCCAAGGACCAAGTCCTCGTCGCTATCTCCGACTTGCAGACTCGCAGCGACAACCGCTTCGACTCTCTCGCCAAAATCGCACGTTTCGCGCAAGATTCCGAGGAGAACCGTGATTTTCTCGTGAGAACAGAATGCTTCGTGCCTGTGCTCGTTGGCTTCCTCGACAATGTCAATGGCGGAGTCGAGTTCCTCGAACAGGTCGTTACGGCGTTGGATTTGGTTATCAGCAAAACGGAAGATCCCGAGGGGCTTAAAAAATTGATACTGGAGAGGCAGAGTGAGGAACCGAAACAGAGCGTAGATTCTCTGCTTCTTGTTCTTCAACAAGGAAGCTGTGGCTCAAAAGTAGCGTCGGCTAGGGTTTTGAAATCCGTCGCCATAGACGCGGAATCGAAGCTGCTGATAGCGGAAAGCGAAGGTGTGGTTTCCCAATTGCTGAATCTAATCACGCCGGAGAAAGATCTGGATCTGATCGAGAGCTGTTTATCATGCCTGGTCGCGATTTCGACGCCGAAACGGAGCAAGATGAAGCTGGTGCGTCTCGGAGCGGTTAAGGCGTTCTCGAAGCTTCTTTCGGCTCGGAGCTTGAGCGTGTCCGTGACGGAGAAGGTTCTGAAGCTGGTGGAAACGGTATCGTCTACGAAGGAAGGGAGGTCGGAGATTTGCGAGGATTCAGCGTGTGTGGCGGCGATAGTGAACAAAGTTCTGAAAGTGTCGAGCGTGGCGACGGAACACGCCGTTACGACGCTGTGGAGTGTGTGTTATCTGTTTCGGGATCAGAAGGCGCAAGAGGCCGTTACGAAGGCTAACGGTTTGACCAAGATTCTGCTTCTGATGCAGAGCAATTGCTCGCCCCAAGTGCGACAAATGTCTGCGGATTTACTTAAGATCTTTCGGGTTGCAAAATCGGTACACAAAAATGGCACTGCATCTCTTGTGTTGTGTTGTGTTATGTATGCTTTTATGTTAAACAACGTCACCGTAGAAGGCAACCAAATTTGA 1293 0.5251 MVRDDLFITVPSFFRCPISLDVMKSPVSLSTGVTYDRSSIQRWLDNGNNTCPATMQVLQTKDFVPNRTLQRLIQIWSDSVRHRVDSPESPASTESVLSKDQVLVAISDLQTRSDNRFDSLAKIARFAQDSEENRDFLVRTECFVPVLVGFLDNVNGGVEFLEQVVTALDLVISKTEDPEGLKKLILERQSEEPKQSVDSLLLVLQQGSCGSKVASARVLKSVAIDAESKLLIAESEGVVSQLLNLITPEKDLDLIESCLSCLVAISTPKRSKMKLVRLGAVKAFSKLLSARSLSVSVTEKVLKLVETVSSTKEGRSEICEDSACVAAIVNKVLKVSSVATEHAVTTLWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCSPQVRQMSADLLKIFRVAKSVHKNGTASLVLCCVMYAFMLNNVTVEGNQI 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12437g00003 430 Gene3D - 103 412 IPR011989 -
Mupr12437g00003 430 PANTHER WDSAM1 PROTEIN 9 398 IPR045185 GO:0061630
Mupr12437g00003 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 88 IPR013083 -
Mupr12437g00003 430 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Mupr12437g00003 430 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Mupr12437g00003 430 CDD RING-Ubox_PUB 11 63 IPR045210 -
Mupr12437g00003 430 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Mupr12437g00003 430 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Mupr12437g00003 430 SUPERFAMILY ARM repeat 116 395 IPR016024 -
Mupr12437g00003 430 SUPERFAMILY RING/U-box 5 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12437g00003 Mupr-Chr12437 18224 19824 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12437g00003 1 397 U-box Gene Family AT5G64660 52.683 9.38e-131 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12437g00003 - - gmx:100799627 671.774