Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12422g00006 ATGACTACGCAACTTCCCTGCGACAGCGAAGGTGTGTGTATGGTGTGCAGTGCCATGCCTGGGGTGGAAGAGATACTCCTCTGTGTCACATGCGACACCCCTTGGCACGCTCCATGTCTATCCCCTCCTCCCAGCCTCGCTGACACTGCTAGCTGGCTCTGCCCTGATTGCTCCATTTCCGATCTTGAGATCCCACCAGCCCCCGCTCCTGCCTGCAACCAACTCGTCTCTGCAATGCTCGCCGTTGAAAACGATGAATCTCTCACTCAACAACAGAAGGCCAAGAAACGCCAAGAACTTATGACCGGAAAGGCCCCTCAGGTGGACGAAGAAGACGAAGCTGAGAAATCGAATCCGTCATCTGTTTCCGATATTCTCACTCGATCTCTCAACTGCTCCATCTGTATCCAGTTACCTGAGAAGCCCGTCACGAGAAGTATGAGTGTGAGTGTGACTGACGTTGGTTTTGGTTTGAACGTAACGCAGACTCCCTGTGGGCATAGTTTCTGTCTGAAGTGCTTTCTCAAATGGATTAGTCAAGGAAAAATGAATTGCGCAAAGTGCCGCCAGATTATCCCCGATAAGATGGCAAGGCAGCCTCGCATCAACATGGCGCTGGTATTTGCAATACGCATGGCTAGGGCGGAGTCTAACAACAATGGTGGCGGCAGAAAAGCGCGGCCTGTGAACCATTTTCTGCACAATCAAGATAGACCCGATCAGCCATTTACCACCGAGCGTGCCCAAAGGAAGGGTCGCGCAAATGCAGCTAGTGGAAAAATATTTGTGACGGTGCCTACTGATCATTTTGGTCCAATCACCGCTGAGAATGACCCTGTACGTAATCAGGGTCTGCTGGTTGGTGAAAGTTGGAATGACAGACTCGAATGCAGACAATGGGGTGCTCACTTTGTCCCTGTTGGTGGAATTGCTGGACAATCAGATCGCGGTGCGCAATCTGTTGTTCTTTCTGGTGGTTACGTGGACGACAAGGATCATGGAGAATGGTTTCTCTATACCGGAAGCGGCGGTAAGGATCTTAGCGGCAACAAACGCACCAACAAGTCTCACTCTTTTGACCAGAAGTTTGAGAAGTACAACCGCGCTCTTCAAGTTAGTTGTCTCCAGGGTTATCCGGTTCGAGTTGTCAGATCTCACAAAGAAAAGCGATCATCATATGCCCCCGAGACTGGTGTGCGGTATGATGGAATTTATAGAATTGAAAAGTGCTGGCAGATAACGGGAATTCAGGGTTTCAAAGTTTGCCGGTATCTATTTGTTAGGTGTGACAATGAACCTGCCCCTTGGACAAGCAATGATCATGGAGATAGGCCCAGAAAATTGCCGTCCATTGATGAACTGAAAAATGCCACAGTCATATTTGAAAGGCCTGACAGTGAGACTCCATTTTGGGATTTTGATGTTGAAGATTCTCTTTGGAAGTGGAAGAAACCACCGCCTCCCAGCAGAAAAAAGGTAAGAAATGAGGAACCCGTAGAAGTAGCAAGGACGAAGTCAAATAGAGAAATAAAGAAATTCCAACTTAAGTCAATCAAGGATCAATTGCAGAGAGGGTTCTCGTGCATGATATGCAAGGAGGTTATGGTTTCACCAGTGACAACACCATGTGCTCATAACTTCTGCAAGTCCTGTCTGGAAGGTGCATTTGCTGGTCAGGCTTTTGTGAAGGAGAGAAGTGGTGGTGGGAGAGCGCTTCGGACTAAAAAAAATGTGATGAAATGTCCTTCTTGCTCTATTGATATTTCTGATTATCTTCAGAACATTCAGGTTGATGTAGATTTGAAGAGTGCGATCGAATCATTGAAAGCCAAAGTTGAAGAAATTGGAGAATCAATGGAGTCAATTGAAGATGCTGATGGATTACAGGATGACGGTGCTGACAAGGATGTAGATACTGACCCAGGAAACAAAAATTCTGTCGAGGAGTCGAATGGTCTACCTGAAGGATCTGATGTTGCTGAGCTTAAAGATACCAATGAAGGGTCAGATCCAGCAGTGAGTGCAAAGAGAAAGAAAGGTGATTCGCCTGATGATGAAGTGGAAAAAAGAGGTAAAAAATACAGTAAGAGTGAGGAAGCAGTGGGTGAAGAAAATGATTCACCATCAATCAGCAGGAAAATTGTACAATTTGGTGCCTTGAACAATGGAAATAAAATCTGA 2181 0.4654 MTTQLPCDSEGVCMVCSAMPGVEEILLCVTCDTPWHAPCLSPPPSLADTASWLCPDCSISDLEIPPAPAPACNQLVSAMLAVENDESLTQQQKAKKRQELMTGKAPQVDEEDEAEKSNPSSVSDILTRSLNCSICIQLPEKPVTRSMSVSVTDVGFGLNVTQTPCGHSFCLKCFLKWISQGKMNCAKCRQIIPDKMARQPRINMALVFAIRMARAESNNNGGGRKARPVNHFLHNQDRPDQPFTTERAQRKGRANAASGKIFVTVPTDHFGPITAENDPVRNQGLLVGESWNDRLECRQWGAHFVPVGGIAGQSDRGAQSVVLSGGYVDDKDHGEWFLYTGSGGKDLSGNKRTNKSHSFDQKFEKYNRALQVSCLQGYPVRVVRSHKEKRSSYAPETGVRYDGIYRIEKCWQITGIQGFKVCRYLFVRCDNEPAPWTSNDHGDRPRKLPSIDELKNATVIFERPDSETPFWDFDVEDSLWKWKKPPPPSRKKVRNEEPVEVARTKSNREIKKFQLKSIKDQLQRGFSCMICKEVMVSPVTTPCAHNFCKSCLEGAFAGQAFVKERSGGGRALRTKKNVMKCPSCSIDISDYLQNIQVDVDLKSAIESLKAKVEEIGESMESIEDADGLQDDGADKDVDTDPGNKNSVEESNGLPEGSDVAELKDTNEGSDPAVSAKRKKGDSPDDEVEKRGKKYSKSEEAVGEENDSPSISRKIVQFGALNNGNKI 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12422g00006 726 ProSitePatterns Zinc finger RING-type signature. 543 552 IPR017907 -
Mupr12422g00006 726 MobiDBLite consensus disorder prediction 619 711 - -
Mupr12422g00006 726 MobiDBLite consensus disorder prediction 660 706 - -
Mupr12422g00006 726 Pfam PHD-finger 12 58 IPR019787 -
Mupr12422g00006 726 SMART ring_2 132 188 IPR001841 -
Mupr12422g00006 726 SMART ring_2 528 584 IPR001841 -
Mupr12422g00006 726 SMART ring_2 13 57 IPR001841 -
Mupr12422g00006 726 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 251 446 - -
Mupr12422g00006 726 ProSiteProfiles Zinc finger RING-type profile. 132 189 IPR001841 -
Mupr12422g00006 726 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 616 IPR045134 -
Mupr12422g00006 726 Pfam SAD/SRA domain 283 431 IPR003105 -
Mupr12422g00006 726 SUPERFAMILY RING/U-box 520 609 - -
Mupr12422g00006 726 Pfam Zinc finger, C3HC4 type (RING finger) 132 188 IPR018957 GO:0046872
Mupr12422g00006 726 ProSiteProfiles YDG domain profile. 280 428 IPR003105 -
Mupr12422g00006 726 MobiDBLite consensus disorder prediction 87 122 - -
Mupr12422g00006 726 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 218 IPR013083 -
Mupr12422g00006 726 Pfam RING-type zinc-finger 528 582 IPR027370 -
Mupr12422g00006 726 Gene3D - 251 449 IPR036987 -
Mupr12422g00006 726 Coils Coil 605 625 - -
Mupr12422g00006 726 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 62 IPR013083 -
Mupr12422g00006 726 SMART PHD_3 12 58 IPR001965 -
Mupr12422g00006 726 SMART G9a_1 275 432 IPR003105 -
Mupr12422g00006 726 SUPERFAMILY PUA domain-like 254 449 IPR015947 -
Mupr12422g00006 726 SUPERFAMILY FYVE/PHD zinc finger 6 61 IPR011011 -
Mupr12422g00006 726 MobiDBLite consensus disorder prediction 89 118 - -
Mupr12422g00006 726 ProSiteProfiles Zinc finger PHD-type profile. 10 60 IPR019787 -
Mupr12422g00006 726 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 506 627 IPR013083 -
Mupr12422g00006 726 ProSitePatterns Zinc finger PHD-type signature. 13 57 IPR019786 -
Mupr12422g00006 726 ProSiteProfiles Zinc finger RING-type profile. 528 585 IPR001841 -
Mupr12422g00006 726 SUPERFAMILY RING/U-box 131 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12422g00006 Mupr-Chr12422 35964 40454 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12422g00006 1 619 C2H2 Transcription Factor Family AT5G39550 54.690 0.0 675
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mupr12422g00006 SAD_SRA 4.6e-50 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12422g00006 K10638 - gmx:100801535 1155.2