Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12408g00002 ATGGCAGATCCTGCTAGCCATGGGAGTTATGAGCGTGACATTGAGCAAGGACGAAAGGCAATCATTGTTCTAAAAAAGGGCACTCAGTTAGTAAAGTATAGTCGAAAAGGGAAGCCAAAATTTTGTTCATTCCGACTCTCATCGGATGGAACAAAATTGGTCTGGATTTCTCATGGAAAGGAAAAGAATCTAAAATTAGCTTCCGTTTCACACATCATCCCAGGACAGAGAACAGCTGTCTTTAAAAGATACTTGCGCCCTGAAAAGGATTATCTATCATTTTCACTTATTTATAAAAAGGGGGAACGATCACTTGATCTGATCTGCAAGGACCAAGCTGAGATAGAGGTATGGTTTTCAGGCCTTCAGGCATTAATTTCCACTGGAGAGCTTTCTAGGCGTGGAATAAGTGAACTATCCAATGATAGTGTTGACTTTGTTCCAAATGATCGTCCTTTTGCTGGGACACTAGACTTCGCCACAAGCATTGCCCGTGTCAGGGTTTCTTTGGAGTCGGTGTCTCGTGAATCGACGTCATCTTGGCCTAGATCAGATGTGGGGTCAGAACATGCTAATATGCCAGTAAAGACAAATGTTGGAGATGGTTTTCGTGTTAGTATATCAAGTATTAGCCACTCAAGTAGTATAGGATCAGGAGCAGATGACATAGAATCTCTAGGTGATGTTTTTATATGGGGAGAAGTTTGGGCAGATTGCAATTCAGCTGATGGATTCGGGAATCAAGCCTCTTGTAAGACAGATGTGCTGATTCCTAAGCCATTAGAGTCTGATGTTGTTCTTGATGTTCATCAGATTGGAGGTGGTGTACGTCACATTGCTCTAGTTACAAGGCAAGGAGAGGTTTTTACTTGGGGAGAGGACTCTGGTGGAAGACTTGGTCATGGGTTTGAGAAAGATTTTAGTCGGCCTCATCTTGTGGAGTCCCTGGCAATTACCAATGTGAGTTTTGTTGCATGTGGTGAATATCATACATGTGCTGTGTCTGCATCTGGTGACCTATTCACCTGGGGTGATGGCACACACGGTGCAGGAATTCTTGGCCACGGTACTGATATTAGCTACTGGACACCAAAGAGGGTGGGGCCTTTAGAGGGAATTCAGGTTGTATCTGTAGCATGTGGTGCATGGCATTTGGCATTAACAACCTCAAATGGGAAATTGTTTACTTTTGGTGATGGAAGATTTGGTGTATTGGGCCATGGAGATCGAGAGAGTGTGTCATATCCAAAGGAGGTACAATTATTGAGTGGACAAAAGGCTATTAAGGTTGCATGTGGAGTGTGGCACACAGCAGCCATTATAGAGATTACGGTTCCATCTGGTTCAAATGCTTCATCCAGGAAGATCTTCACATGGGGTGATGGTGACCAATATCGTTTGGGTCATGTTAACAAGGAAACTTACCTTCAACCAACTTGTGTAGCTGCACTTGCTGATTACAGTTTTCAGCAGGTTGCATGTGGTAACACTATGACTGTTGCACTCACTGTATCTGGTCATATTTTTACTATGGGAAGCACAGCATATGGTCAACTAGGAAATCCAATGTCTGATGGAAAAGTGCCAATTCTAGTTCGAGATAAGTTAGTAGGCGAGTTTGTAGAGGAACTATCATGCGGGGCGCATCATGTTGCTGTATTGACTTCAAGAAGTGAACTATATACTTGGGGGAGAGGTGCCAATGGAAGATTAGGACATGGAGACATAGAAGACCAGAAAACTCCAACATTGGTGGAAGCCTTGAAAGACAGGCACATTAAGCATATTGCATGTGGCTCCACCTTTACATCTTGTATATGCCTACATAAATGGGTTTCTGGAGTTGACCAATCTACTTGCTCTGATTGTCGACAACCATTTGGTTTTACCAGAAAAAGGCATAATTGTTATCATTGTGGATTGGTGTTTTGCCATCCTTGTAGTTCAAAAAAGGCTTTGAAAGCAGCACTAGCTCCAACACCTAGCAAACCGCATCGTGTGTGTGATGCTTGTTTTTCTAAGCTAAAAAGTTCTGATAATGCTTCCAATTTGAATAAAGAAATTAGGCGTCCTTCTAGTTCCAAATATGGAAGGGAAAGATTTGATCGGGGAGAGTTAAAGTCTTCAAGATTTCTCTTGCCTCCCATCACAGAACCACTACTATGCCTTGAGACTAGGACTAATAAGCTTTCAAGTACACATGACTCTTCTTCCATAGTTCGACCTGCTGAAGTTCCTTCCAGGATACAATTGAAAGATGTTTCATTTCCAAGTTTATTAAGTTCTATGCAGAATGCTTACAAGCCTCTCAAACTGCAAATTCAACCTCCAACTCCACCAACACCATCTACTTCCAGACCTATGTCACCATTTTCTAGAAGACCGCCAAGCCCAACGCGTTCTACCTCCCCTGGATTTTCAAGAAGCCTCATTGATAATTTAAAGAAGAAAAATGATAATTTGAATCAAGAAGTCTCAAAATTGCAAAACAAAAATCGGAATTTGAGGCAAAAGAACAACATGCAAGATACGAAGATTCGGGAGCTTCAGAAAAATATTGTAGAAGCCAAACCACAAGTTGGAGAGGAATCTTCTAAGCTTAGAGAAGCAAAGGAATTTATTATGTTCATGACAAATAAGTTGCGTGAAGTGACTGAGAAGTTGCCACCTGAAGTTCCTGACTATGAAACCTTGAGAACCATTTATGCTCAAGCTGAAGAATTTCTTCATAAAGAAAAAGAGATTGAATCTTCTTCCACCCCACCGAGCCTTAAGTCTAAGCAACAAAGTGCACCTAATTTACCTACCTCAGATAGCGACTCTTCAAAACTGCAAGAGCTAAAAATGGAAGGAAATGATGATGCTTCTAGGGTTGTTTCATCTACAGATGGAGAGAATACTCTTGAAGAAATCAGAACCTCATCTGCATTTAGTCCAGGACTGACCCCGCCCAGCTTAGGAAATGGTTCGAGATTACGTGACTCTATTATACCTTTGAGAGAAGGAGAAGGATCAGTCATTGAACAATTTGAGCATGGTGTTTATATCACACTCATAGTACTACCTAGTGGTTTCAAAGTTTTCCAACGAATTAGATTCAGTAAACGAAGATTCAATGAGCAACAAGCATCAGAATGGTGGAACCAAAACAAAGATAGGGTGCTTAATAAATACAGTCCACCATCCATAAAGAATGCAATTACTGGTTCATCTATTACCCCCCCACATGCTGAAGAGAATATTGAGGCATTACCTTCTTCC 3261 0.4149 MADPASHGSYERDIEQGRKAIIVLKKGTQLVKYSRKGKPKFCSFRLSSDGTKLVWISHGKEKNLKLASVSHIIPGQRTAVFKRYLRPEKDYLSFSLIYKKGERSLDLICKDQAEIEVWFSGLQALISTGELSRRGISELSNDSVDFVPNDRPFAGTLDFATSIARVRVSLESVSRESTSSWPRSDVGSEHANMPVKTNVGDGFRVSISSISHSSSIGSGADDIESLGDVFIWGEVWADCNSADGFGNQASCKTDVLIPKPLESDVVLDVHQIGGGVRHIALVTRQGEVFTWGEDSGGRLGHGFEKDFSRPHLVESLAITNVSFVACGEYHTCAVSASGDLFTWGDGTHGAGILGHGTDISYWTPKRVGPLEGIQVVSVACGAWHLALTTSNGKLFTFGDGRFGVLGHGDRESVSYPKEVQLLSGQKAIKVACGVWHTAAIIEITVPSGSNASSRKIFTWGDGDQYRLGHVNKETYLQPTCVAALADYSFQQVACGNTMTVALTVSGHIFTMGSTAYGQLGNPMSDGKVPILVRDKLVGEFVEELSCGAHHVAVLTSRSELYTWGRGANGRLGHGDIEDQKTPTLVEALKDRHIKHIACGSTFTSCICLHKWVSGVDQSTCSDCRQPFGFTRKRHNCYHCGLVFCHPCSSKKALKAALAPTPSKPHRVCDACFSKLKSSDNASNLNKEIRRPSSSKYGRERFDRGELKSSRFLLPPITEPLLCLETRTNKLSSTHDSSSIVRPAEVPSRIQLKDVSFPSLLSSMQNAYKPLKLQIQPPTPPTPSTSRPMSPFSRRPPSPTRSTSPGFSRSLIDNLKKKNDNLNQEVSKLQNKNRNLRQKNNMQDTKIRELQKNIVEAKPQVGEESSKLREAKEFIMFMTNKLREVTEKLPPEVPDYETLRTIYAQAEEFLHKEKEIESSSTPPSLKSKQQSAPNLPTSDSDSSKLQELKMEGNDDASRVVSSTDGENTLEEIRTSSAFSPGLTPPSLGNGSRLRDSIIPLREGEGSVIEQFEHGVYITLIVLPSGFKVFQRIRFSKRRFNEQQASEWWNQNKDRVLNKYSPPSIKNAITGSSITPPHAEENIEALPSS 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12408g00002 1087 CDD PH_PLC_plant-like 12 127 - -
Mupr12408g00002 1087 MobiDBLite consensus disorder prediction 912 964 - -
Mupr12408g00002 1087 Coils Coil 811 852 - -
Mupr12408g00002 1087 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 272 282 IPR000408 -
Mupr12408g00002 1087 SUPERFAMILY PH domain-like 20 126 - -
Mupr12408g00002 1087 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 454 505 IPR000408 -
Mupr12408g00002 1087 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 338 391 IPR000408 -
Mupr12408g00002 1087 Gene3D - 206 446 IPR009091 -
Mupr12408g00002 1087 FunFam PH, RCC1 and FYVE domains-containing protein 1 198 445 - -
Mupr12408g00002 1087 Pfam Transcription factor BRX N-terminal domain 862 894 IPR027988 -
Mupr12408g00002 1087 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 558 609 IPR000408 -
Mupr12408g00002 1087 Pfam Pleckstrin homology domain 22 126 IPR001849 -
Mupr12408g00002 1087 MobiDBLite consensus disorder prediction 919 942 - -
Mupr12408g00002 1087 ProSiteProfiles BRX domain profile. 1004 1059 IPR013591 -
Mupr12408g00002 1087 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 392 443 IPR000408 -
Mupr12408g00002 1087 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 506 557 IPR000408 -
Mupr12408g00002 1087 CDD FYVE_like_SF 619 672 - -
Mupr12408g00002 1087 PRINTS Chromosome condensation regulator RCC1 signature 381 399 IPR000408 -
Mupr12408g00002 1087 PRINTS Chromosome condensation regulator RCC1 signature 122 138 IPR000408 -
Mupr12408g00002 1087 PRINTS Chromosome condensation regulator RCC1 signature 449 470 IPR000408 -
Mupr12408g00002 1087 PRINTS Chromosome condensation regulator RCC1 signature 272 288 IPR000408 -
Mupr12408g00002 1087 PRINTS Chromosome condensation regulator RCC1 signature 288 302 IPR000408 -
Mupr12408g00002 1087 SMART fyve_4 608 677 IPR000306 GO:0046872
Mupr12408g00002 1087 MobiDBLite consensus disorder prediction 773 794 - -
Mupr12408g00002 1087 SUPERFAMILY RCC1/BLIP-II 226 611 IPR009091 -
Mupr12408g00002 1087 Pfam FYVE zinc finger 610 676 IPR000306 GO:0046872
Mupr12408g00002 1087 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 286 337 IPR000408 -
Mupr12408g00002 1087 MobiDBLite consensus disorder prediction 1065 1087 - -
Mupr12408g00002 1087 Gene3D - 447 614 IPR009091 -
Mupr12408g00002 1087 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 430 440 IPR000408 -
Mupr12408g00002 1087 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 60 882 - -
Mupr12408g00002 1087 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 615 686 IPR013083 -
Mupr12408g00002 1087 Pfam Regulator of chromosome condensation (RCC1) repeat 559 606 IPR000408 -
Mupr12408g00002 1087 Pfam Regulator of chromosome condensation (RCC1) repeat 286 334 IPR000408 -
Mupr12408g00002 1087 Pfam Regulator of chromosome condensation (RCC1) repeat 337 385 IPR000408 -
Mupr12408g00002 1087 Pfam Regulator of chromosome condensation (RCC1) repeat 391 440 IPR000408 -
Mupr12408g00002 1087 Pfam Regulator of chromosome condensation (RCC1) repeat 456 502 IPR000408 -
Mupr12408g00002 1087 SUPERFAMILY FYVE/PHD zinc finger 610 681 IPR011011 -
Mupr12408g00002 1087 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 614 676 IPR017455 -
Mupr12408g00002 1087 Pfam Transcription factor regulating root and shoot growth via Pin3 1006 1058 IPR013591 -
Mupr12408g00002 1087 Gene3D - 15 133 IPR011993 -
Mupr12408g00002 1087 MobiDBLite consensus disorder prediction 772 808 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12408g00002 Mupr-Chr12408 17516 25722 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12408g00002 1001 1059 Major Intrinsic Protein MIP AT1G31880 38.983 3.21e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12408g00002 - - gmx:100778984 1655.96