Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr123g00006 CGGGGTCCTAGTCAAGAAGCGAAGAAAGTTTTCAGGTTTACGAAGAGAAAGAGAAAAGGAAAGAAAGCAGAACGGGGTTTAAATTTTGAGAGGCATTGCATTGAGTTGCGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGCGCATCCATGGAAGTGGATGACTGGGATTTGAGCGCAGAGGACCTCGATTCTCTCGAAAGAGATGCTTTCCAGAAAATTGCTCAACAACGCAACAATTCTTCAACCAACCACTTCCCCCCAAAACCCCTTCCCGATTCACGTCCCCAAGCTGTAAAGTTATTATCTTTTCTCATTTGTCGTTCTTTCCCATTATTTCACGCTCATGGGTTTCTCTCTCTTTCTGTTGCTGCTTTGTCTCAGGGAGCAAGAGCATTGCCCACGTCATTGAAATCAGGGTCAAACAACGACAAACATTCAAAAGAGCTGCCAAAGTTTCCGGTCAAGTTTTTTCTTCATTCCAGTGGAAATGTTGCAGCAAAGTTTCAATATGACCAGGTAATAGTTGCTGCTTTTCGAAGAATCCCTAAATCTGCTTGGAATGGAAAGGAACGGTTATGGGTATTCCCTCTATCTTCTTTGTCAGAAGCAGAAAAGATTCTTCGAGAAATATCTGGTTATAATGTTCAGGTGGAAAACTTAGACCCCTTAGTGCAACGAGCCATTGCTGCAGCATCTGCAATTCCAGATCTTCAAGTTGTTATTTTGGCTGCTTTACTGAAAGATCGGTACCACAAGATCCCTAGTTTTATTGAATCAAAGCTATTGCCATTTCAGCGAGAAGGTGTTAGGTTTATATTGCAGCATGGAGGACGTATTCTCTTAGCAGATGAAATGGGACTTGGGAAAACATTGCAGGCAATTCACTCTTCATGCATTCAGGACTCGTGGCCTGTTCTCATACTTGCACCATCTTCATTACGTTTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCATCAGATATACTTATTGTCTTACCTCAAAGTGGTGGATCAAATAGAGGAGGTTTCAATATAGTATCTTCAAGTGCCAAAAGCCGCATTTGTCTGGATGGACTATTCAACATTATCTCATACGATTTGGTGCCAAAGCTACAAAATATGCTTATGACATGTGACTTTAAGGTTGTGATTGCTGATGAATCACATTATCTGAAAAATGCTCAGGCAAAGAGGACAACTGCTTCTCTTCCTGTCATAAAGAAAGCTCAATATGCATTATTGCTTAGTGGAACACCTGCTTTATCCCGACCAATTGAACTATTCAAGCAGCTGGAAGCTTTGTATCCTGATGTATATAGGAATGTTCATGATTATGGTAACCGGTACTGCAAGGGTGGAGTTTTTGGAGTTTATCAAGGTGCAAGTAACCACGAAGAGTTGCACAACTTGATGAAGGCAACAGTGATGATTCGCAGGCTTAAAAAGGATGTTCTTTCTCAACTTCCTGTAAAGCGCAGGCAACAAGTCTTCCTAGACTTAGCTGATAAGGACATGAAGCAAATTAATGCTTTATTTCATGAGTTGGAGATGGTAAAAGCCAAAATTAAGTCAGCCAAATCACAAGAGGAGGCTGAATCACTCAAGTTTACTCAAAAGAATCTTATTAACAAGATATATACTGATTCTGCAGAAGCTAAGATTCCATCTGTTCTTGACTATGTTGGAACTGTTATTGAGAAGAAAAAAGTGGGTTGCATCCGAATTGATGGAGGTACACCTGCTGCATCCAGGCAACAATTGGTTACAGACTTTCAGGAAAAAGATGCTATCAAGGCAGCAGTGCTATCTATTAAAGCTGGAGGCGTTGGGTTAACTTTAACTGCTGCTAGCACAGTAATCTTTGCAGAATTGTCTTGGACTCCCGGTGACCTAATTCAGGCTGAAGACAGGGCTCATAGAATTGGCCAGGTGTCTTCAGTAAATGTACACTACTTGCTAGCAAATGACACAGTTGATGACATCATATGGGACGTAGTGCAAAGCAAACTGGATAACTTGGGGCAGATGTTAGATGGCCATGAGAACGCCTTAGAGGTCTCAGCTAAGGCCCCAGCTAGTAGTCTGCCGGCGAGTAGCCCTTCAAAGCAGAAAACTCTAGACCAGTTTGTTAGAAGATGTAGTAACATGGATAGGTTGGAACATGAGCCCAACCCCAAACGTCCCCGAAAC 2202 0.421 RGPSQEAKKVFRFTKRKRKGKKAERGLNFERHCIELRGRERERERESASMEVDDWDLSAEDLDSLERDAFQKIAQQRNNSSTNHFPPKPLPDSRPQAVKLLSFLICRSFPLFHAHGFLSLSVAALSQGARALPTSLKSGSNNDKHSKELPKFPVKFFLHSSGNVAAKFQYDQVIVAAFRRIPKSAWNGKERLWVFPLSSLSEAEKILREISGYNVQVENLDPLVQRAIAAASAIPDLQVVILAALLKDRYHKIPSFIESKLLPFQREGVRFILQHGGRILLADEMGLGKTLQAIHSSCIQDSWPVLILAPSSLRLQWASMIQQWLNIPSSDILIVLPQSGGSNRGGFNIVSSSAKSRICLDGLFNIISYDLVPKLQNMLMTCDFKVVIADESHYLKNAQAKRTTASLPVIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYRNVHDYGNRYCKGGVFGVYQGASNHEELHNLMKATVMIRRLKKDVLSQLPVKRRQQVFLDLADKDMKQINALFHELEMVKAKIKSAKSQEEAESLKFTQKNLINKIYTDSAEAKIPSVLDYVGTVIEKKKVGCIRIDGGTPAASRQQLVTDFQEKDAIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVHYLLANDTVDDIIWDVVQSKLDNLGQMLDGHENALEVSAKAPASSLPASSPSKQKTLDQFVRRCSNMDRLEHEPNPKRPRN 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr123g00006 734 Pfam Helicase conserved C-terminal domain 565 646 IPR001650 -
Mupr123g00006 734 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 53 722 - -
Mupr123g00006 734 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 270 441 IPR014001 -
Mupr123g00006 734 CDD DEXHc_HARP_SMARCAL1 261 483 - -
Mupr123g00006 734 SMART helicmild6 563 646 IPR001650 -
Mupr123g00006 734 CDD SF2_C_SNF 560 657 - -
Mupr123g00006 734 ProSiteProfiles HARP domain profile. 145 222 IPR010003 -
Mupr123g00006 734 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 254 494 IPR027417 -
Mupr123g00006 734 SMART ultradead3 257 449 IPR014001 -
Mupr123g00006 734 Gene3D - 242 508 IPR038718 -
Mupr123g00006 734 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 521 689 IPR001650 -
Mupr123g00006 734 Pfam SNF2-related domain 280 540 IPR000330 GO:0005524|GO:0140658
Mupr123g00006 734 FunFam Chromatin remodeling factor18 225 507 - -
Mupr123g00006 734 Coils Coil 512 532 - -
Mupr123g00006 734 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 383 689 IPR027417 -
Mupr123g00006 734 Gene3D - 540 723 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr123g00006 Mupr-Chr123 28266 37333 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr123g00006 556 688 RAD5 or RAD16-like Gene Family AT1G02670 32.331 7.66e-15 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mupr123g00006 SNF2_N 1.5e-26 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr123g00006 K14440 - gmx:100778246 1109.75