Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12380g00001 ATGTCGAAGAATAAAAAGTCTAGCTTAGGTCGCCAAAAGATCCCAATTGAGAAAATACCGAAAAAGAGTCATTTGCAAGTTACATTCTCTAAACGCCGTTCAGGGCTGTTCAAAAAAGCCAGCGAGCTCTGCACCCTGTGTGGGGTAGAGATAGCAATTGTAGTTTTCTCTCCAGCGGACAAGGCGTTCTCTTTTGGTCATCCAGAGGTCGAGTCCCTCATCGACCGTTACACGACACGGAACCCTCCGCAAGAGTCTAGTGCGCACCACCTGGTCGAGGCGCACCGAAACGCCAACGTTCGCGATCTCAACATGCAGCTGACGCAGGTTTTTAACCATTTGGAGATGGAAAAGAAGCGAGGGGAGGATCTAGATCACGTTAGGAAAGCCAGGCAGAGGCAGTTTTGGTGGGAGAGCCCTGCGGATGAGCTTGGACTTCATGAACTCCTCCAGCTAAAGGTCTCCATTGAAGAGCTCAAGAAGAACATTGAAAAACATGCTAGCAAATTCATGTTGGAGCACTCTGCTAACATGTCTTCTTCTTCCTCAATTCTTCCCCATAATAATGGACTTGGTCCATCACTTGGACGTTATGACGCCTTTGACAACAAATCCGCTCCTGGGATTACTATTGCTGCGCCACTTCCTAATGCCCATTATCTCGCTTTTCGGACTAGCTATCTTTGA 687 0.4789 MSKNKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPADKAFSFGHPEVESLIDRYTTRNPPQESSAHHLVEAHRNANVRDLNMQLTQVFNHLEMEKKRGEDLDHVRKARQRQFWWESPADELGLHELLQLKVSIEELKKNIEKHASKFMLEHSANMSSSSSILPHNNGLGPSLGRYDAFDNKSAPGITIAAPLPNAHYLAFRTSYL 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12380g00001 228 Gene3D - 21 88 IPR036879 GO:0003677|GO:0046983
Mupr12380g00001 228 Coils Coil 149 169 - -
Mupr12380g00001 228 PANTHER MADS BOX PROTEIN 11 166 - -
Mupr12380g00001 228 FunFam Agamous-like MADS-box protein AGL62 21 87 - -
Mupr12380g00001 228 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Mupr12380g00001 228 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Mupr12380g00001 228 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Mupr12380g00001 228 SUPERFAMILY SRF-like 10 90 IPR036879 GO:0003677|GO:0046983
Mupr12380g00001 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Mupr12380g00001 228 CDD MADS_MEF2_like 10 77 IPR033896 GO:0000977|GO:0045944
Mupr12380g00001 228 Gene3D - 89 184 - -
Mupr12380g00001 228 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Mupr12380g00001 228 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12380g00001 Mupr-Chr12380 654 1340 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12380g00001 6 183 Type I MADS-box Gene Family AT5G60440 52.486 2.75e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr12380g00001 SRF-TF 3.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12380g00001 - - gmx:100793705 397.512