Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12315g00001 GTCATAGGTTTTCGAGTGTTCAAAAGTGGCCAAGCTGAAGATAATACAAACATTGAAAACAACGAAAACGAAGTGAGCCCTCAACAATCACATGAATCAATATTGCAGAGTCTCTTTCCTTTATTTCCCCTCGCTGCTGAAAGTGAGCAAATGTTTCCTCAGCCACAGATGAATCTCCCTGAACAAGGTCCCAGTACTGGTGATAAATCCTCTAACAATGCTGCTTCAAGTTCCCTACCAAATAGGCCTTCAAACGATGTTGATTTGTCACTAATCTTAGGCCATGAGGGTGCATTAAAATCTGCTGCCATTGCCAACAATGTTGCACCAGGAGGAATGAATGGAGGCACCTCAACCAACATTACGCTCTTACCATCCAAGAGAACATCTGGAGAATTTGAGTATGGCGGAAGTTCAAACATGGATGAACAAGTTTCACTGCCCAAACGACGTGTCACTGAGTCACATGTGATTGCCAATAACAATGTGAACCCATCACCATCACCGGATCTCATGCAAGGACATGATGTTAACCCACAGAATGGAGCAGCTCCTACTCTACCACAACATCATCATCATCATGTGCAATGTCCACTGCACGGCCAAGCTTCCTTGCAACATAACCTACCGCCTCTTCTTCCCAATAGTCAAAGATCATCAATGAATGCTCCTCTTTCACGAGGAATATTTTACCACCCTCTCAGTGGCCAAAATGGTCCTTCTTCATCTTCAAGTCCTTCACAAGGATCAAGAGAAATATTGAACCAATCTGCTGCACCAACTAGTTCTGGAACTCGGAACTATCATAATCAAGTCACAGTACCTTCACTTCGACCTAATGTTAGGCCTCCATCTCAGGCAAAACAATATATTGATGAGAAAAAGGGTCGTGATGAAGCACAAGATCAATCTATACTAGATCGCCTGCGCAATGGCCGCCCTCTATTGTTCGAGGAAATGATGGTCCTTGACTATTCACTTGTGTTACGAGCGTTTGAGAATGCGGGGTTCCCGATATTTGATAATGTGCAACCACACACGGGACTGAGTGTCGAAACAATCATGCAACACATTAAGCGAGAAAATTTTGTGTTAACTAATAATGAGAATCCAGAAGATGGAGAAAACTGCCCTATTTGTCTGGAGGAATATGAAGATGGAGATGAAATTGGGAAGCTGGATTTATGTGTCCACAAGTTTCATGTTCAGTGCATCAAACAATGGCTTATGAACAAGAACTTTTGCCCGATCTGCAAACGAATTGCATTGACAATGAAAAATGTCGAAAATGAAGCAGGAGCTGAAGTATTT 1311 0.4264 VIGFRVFKSGQAEDNTNIENNENEVSPQQSHESILQSLFPLFPLAAESEQMFPQPQMNLPEQGPSTGDKSSNNAASSSLPNRPSNDVDLSLILGHEGALKSAAIANNVAPGGMNGGTSTNITLLPSKRTSGEFEYGGSSNMDEQVSLPKRRVTESHVIANNNVNPSPSPDLMQGHDVNPQNGAAPTLPQHHHHHVQCPLHGQASLQHNLPPLLPNSQRSSMNAPLSRGIFYHPLSGQNGPSSSSSPSQGSREILNQSAAPTSSGTRNYHNQVTVPSLRPNVRPPSQAKQYIDEKKGRDEAQDQSILDRLRNGRPLLFEEMMVLDYSLVLRAFENAGFPIFDNVQPHTGLSVETIMQHIKRENFVLTNNENPEDGENCPICLEEYEDGDEIGKLDLCVHKFHVQCIKQWLMNKNFCPICKRIALTMKNVENEAGAEVF 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12315g00001 437 MobiDBLite consensus disorder prediction 54 88 - -
Mupr12315g00001 437 MobiDBLite consensus disorder prediction 163 185 - -
Mupr12315g00001 437 MobiDBLite consensus disorder prediction 13 32 - -
Mupr12315g00001 437 MobiDBLite consensus disorder prediction 54 85 - -
Mupr12315g00001 437 SMART ring_2 377 418 IPR001841 -
Mupr12315g00001 437 MobiDBLite consensus disorder prediction 163 302 - -
Mupr12315g00001 437 Pfam Ring finger domain 376 419 IPR001841 -
Mupr12315g00001 437 MobiDBLite consensus disorder prediction 208 224 - -
Mupr12315g00001 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 354 423 IPR013083 -
Mupr12315g00001 437 ProSiteProfiles Zinc finger RING-type profile. 377 419 IPR001841 -
Mupr12315g00001 437 MobiDBLite consensus disorder prediction 288 302 - -
Mupr12315g00001 437 MobiDBLite consensus disorder prediction 235 283 - -
Mupr12315g00001 437 SUPERFAMILY RING/U-box 356 425 - -
Mupr12315g00001 437 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 37 423 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12315g00001 Mupr-Chr12315 4236 10649 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12315g00001 329 421 C3H Transcription Factor Family AT2G17450 38.776 4.42e-16 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12315g00001 - K10635 vun:114179757 165.236