Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12313g00001 ATGGGACGTGGAAAGATTGAGATAAAGAGGATCGAAAACACGACCACAAGGCAAGTGACCTTCTCCAAAAGAAGAGGTGGCCTTTTGAAGAAGACAAAGGAGCTTTCTGTGCTTTGTGATGCACAGATCGGGCTTATCATCTTCTCCAGCACAGGGAAGATGTGGGATTGGTGCACCGAACCCTTCAGGATGGAGCAGATCATAGAAAAGTACCAGAGATCAACAGGAGCTCGCATACCGGAACGTGATCACCCCCGAGAAGAATTATTCCATGACATGGCAATGCTGAGGCAGGAAACTCTTCGTCTTGAATTGGGAATTCAACGTTATCTTGGAGAGGACATGGGGTGCTTACAATATGAGGACATGACTAAACTTGAACAAGAATTGGAGAACTCTTTGGCAAAAGTTCGAAACCGTCAGAAAAAGGCATAA 435 0.4552 MGRGKIEIKRIENTTTRQVTFSKRRGGLLKKTKELSVLCDAQIGLIIFSSTGKMWDWCTEPFRMEQIIEKYQRSTGARIPERDHPREELFHDMAMLRQETLRLELGIQRYLGEDMGCLQYEDMTKLEQELENSLAKVRNRQKKA 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12313g00001 144 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 140 - -
Mupr12313g00001 144 ProSiteProfiles K-box domain profile. 86 144 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mupr12313g00001 144 Coils Coil 120 143 - -
Mupr12313g00001 144 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mupr12313g00001 144 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mupr12313g00001 144 Pfam K-box region 85 143 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mupr12313g00001 144 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Mupr12313g00001 144 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Mupr12313g00001 144 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mupr12313g00001 144 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mupr12313g00001 144 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mupr12313g00001 144 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mupr12313g00001 144 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12313g00001 Mupr-Chr12313 1174 3914 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12313g00001 1 143 MADS-box Gene Family AT5G23260 52.448 1.78e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mupr12313g00001 K-box 4.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12313g00001 - - gmx:100783876 238.424