Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12298g00002 ATGACTGGGTGCCATTGTCCAGCTCCTGAGAAGAGACAGAGAGTCCCCTCCGCGTACAACCGCTTTATTAAGGACGAGATCCAACGCATCAAGTCTGTCAATCCCGATATAACTCACAGGGAAGCCTTCAGTGCAGCTGCCAAGAATTGGGCCCACTTCCCACACATCCACTTTGGTCTCATGCCTGATCAGACTGTGAAGAAGACAAATGTGTGCCAGCAGGAAGGAGAGGAGGTTCTCATGAAAGATGGGTTTTATGCTTCAGCTAATGTTGGTGTCTCACCCTACTAA 291 0.4948 MTGCHCPAPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNVCQQEGEEVLMKDGFYASANVGVSPY 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12298g00002 96 Pfam YABBY protein 8 60 IPR006780 GO:0007275
Mupr12298g00002 96 CDD HMG-box_SF 14 50 - -
Mupr12298g00002 96 FunFam Axial regulator YABBY 5 76 - -
Mupr12298g00002 96 Gene3D High mobility group box domain 5 70 IPR036910 -
Mupr12298g00002 96 PANTHER PROTEIN YABBY 6-RELATED 8 70 IPR006780 GO:0007275
Mupr12298g00002 96 SUPERFAMILY HMG-box 5 54 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12298g00002 Mupr-Chr12298 7756 9269 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12298g00002 9 96 C2C2-YABBY Transcription Factor Family AT2G45190 80.435 1.61e-48 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Mupr12298g00002 YABBY 5.4e-36 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12298g00002 K25796 - gmx:100786175 186.037