Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1228g00005 ATGAAAGCCCCCAAACCCAAACCCAAACCCAATCCCACAATCACGCTCTTGTTCATCTCGAACCTTGCAGTGGCAAGCATAGAAACATGCTTGGACAGCTTTTGCCAGAGCGAGGAGCCAGTAATCCGATTCCCGTTTCGAATAGAGGGAAAGCACGCAGAGGCATGCGGATACCCCGGGTTCAGAGTGTCCTGCAGCGACAACGCCCAAACACTGCTCAACCTACCAAATTGGGGCCAACTAAGAATCAAAGAAATAAACTACGCCGCGCAGCAACTATGGGTGAACGATCCCAACAACTGCCTCCCCAAACGCCTTCTCTCTCTCAACCTCTCCAACTCTCCATTCGACGCCGTTTACCACCAACAATTCACCTTCTTTAACTGCTCCTTCAACTTGGACTACCTCGCCCGTCGCTATCGCCCCATAAATTGCCTCAGCGATTCTCCTAACTACGCCGTTTTTGCCACGCCTTCGCCCACCGTGGTTGTGCACTTGTCGTCTTTGTGCGATTTGGTTCGGACGGTGAAGGTGCCCGTCCGGTCGCCGTTTTACGACCGAGTGCTGTCATCTGACCTCAGCGACGATCTCCGCCTCTCCTGGGATTCGCCGCCGTGCGGGAGGTGCGAGTCCCACGGTGGCCGATGCGGCTTCAAGAGCAACGACACTTCTGAACTCGACTGTTCCGGTGTCCCTTCAAAAGGGATTTCCCGTGGTGCACGCTACGCCATAGCCATATGCATAGGGTTGCCGGCTTTGTTGTGCTCCATTGGAGTATTGAGTTGCATCTGCAGCCGTTTCAGAATCGGGATCCACGGTGGACGTTGGGCTCCTGAAACGGTGGCAGATTTTGAGCCCCTAGTCGGCTCACGGCCCATAATAATCACGGGCCTAGACAGGCCCACAATTGAATCCTACCCAAAAATGGTTATAGGCGAGAACAGACGCTTACCCAAGAAGGGTGACAAGACATGCTCAATATGCCTGTCAGAGTACATGCCGAAGGAGACGGTGAAAAGCATACCTGAATGTGGACACTGTTTTCATGCACATTGCATCGACGAATGGCTTCCACTGAACGCCTCGTGCCCAATTTGCCGAACTTCTCCCCGAAAGTTACCACAACCGCTTGCGAGATCATCACCATAA 1149 0.5335 MKAPKPKPKPNPTITLLFISNLAVASIETCLDSFCQSEEPVIRFPFRIEGKHAEACGYPGFRVSCSDNAQTLLNLPNWGQLRIKEINYAAQQLWVNDPNNCLPKRLLSLNLSNSPFDAVYHQQFTFFNCSFNLDYLARRYRPINCLSDSPNYAVFATPSPTVVVHLSSLCDLVRTVKVPVRSPFYDRVLSSDLSDDLRLSWDSPPCGRCESHGGRCGFKSNDTSELDCSGVPSKGISRGARYAIAICIGLPALLCSIGVLSCICSRFRIGIHGGRWAPETVADFEPLVGSRPIIITGLDRPTIESYPKMVIGENRRLPKKGDKTCSICLSEYMPKETVKSIPECGHCFHAHCIDEWLPLNASCPICRTSPRKLPQPLARSSP 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1228g00005 382 Pfam Ring finger domain 324 367 IPR001841 -
Mupr1228g00005 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 295 371 IPR013083 -
Mupr1228g00005 382 SMART ring_2 325 366 IPR001841 -
Mupr1228g00005 382 ProSiteProfiles Zinc finger RING-type profile. 325 367 IPR001841 -
Mupr1228g00005 382 SUPERFAMILY RING/U-box 318 370 - -
Mupr1228g00005 382 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 15 370 IPR046948 -
Mupr1228g00005 382 Pfam Wall-associated receptor kinase galacturonan-binding 30 97 IPR025287 GO:0030247
Mupr1228g00005 382 Pfam Wall-associated receptor kinase C-terminal 174 228 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1228g00005 Mupr-Chr1228 12559 15934 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1228g00005 28 370 C3H Transcription Factor Family AT2G46495 38.617 1.51e-70 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1228g00005 - - vun:114163980 611.298