Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mupr12282g00004 | ATGGTGAAAATCTCGGTTGGTGGATACGATGATGGGGAAGGACCCAGCAACCGAAACCAGAAGCGACGCAGGGAAGAAGAAGAAGAAGGGGAAGAGGAAGAGGAAGAGGAAGAAGAAGAAGAAGATCAACAACTTCAACAATTCTTTGAAATCTACAATTCTATTGGAATGGAAGAGCAAGAAGATCATCCTGCTCCACCCGACGATGGATCCAATGCTAACACAAACGGGTCTGCAACCAGTAGCAGGGACAGGAACATTCCTGTCTTGGTTTCCGATCCTGATGTCTTCGATTGCTGCATTTGCTATGAACCCTTGTCTGCCCCTGTTTTCCAGTGTGAGAATGGACATATTGCTTGCTCTAGTTGCTGTGTCAGACTCAGGAACAAGTGTCCCATGTGCTTAATGCCCATTGGGTATAACCGTTGCCGAGCTATTGAGAAGGTCCTGGACTCTATTAAAATGTTATGCCCGAATGCAAATTATGGCTGCACAGAGAAGTTTAGTTACAGCAGGAAAATCGACCATGAGAAGGAATGCATCTATCTACCATGTTCATGCCCACATACAGGTTGCGATTTTGTTGCCTCATCCAAGGAGTTATTCCTCCACTTCAGCCATAGACATGTAGGCTCTGGAACACAGTTTTCATATGATACAACTTTCACTGTCATCTTTAGTACTTTCCAAAAAACAATTGTTCTTCAAGAGAAAAATGATGCTAATCTGTTTATTGTTCACAATAACCATGAGCATCTAGGGAATATAATTCACATTAGTTGCATTGGCCCCAAGTCCAATATTGCAGGGTTTCGGTATGAAGTTTTGGCTAGGTTTCGAGGAAACACTCTAATATTGCAATCTTTTACCAAGATCATTCAAGGCCAATATGCGGATGCTCCTTCAAGTGCGTTCCTTTTGATTCCATCTGGTTTTTTTGCCTCTAGGCATTTGAAACTGGATATTTGCATA | 972 | 0.4259 | MVKISVGGYDDGEGPSNRNQKRRREEEEEGEEEEEEEEEEEDQQLQQFFEIYNSIGMEEQEDHPAPPDDGSNANTNGSATSSRDRNIPVLVSDPDVFDCCICYEPLSAPVFQCENGHIACSSCCVRLRNKCPMCLMPIGYNRCRAIEKVLDSIKMLCPNANYGCTEKFSYSRKIDHEKECIYLPCSCPHTGCDFVASSKELFLHFSHRHVGSGTQFSYDTTFTVIFSTFQKTIVLQEKNDANLFIVHNNHEHLGNIIHISCIGPKSNIAGFRYEVLARFRGNTLILQSFTKIIQGQYADAPSSAFLLIPSGFFASRHLKLDICI | 324 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mupr12282g00004 | 324 | CDD | RING-HC_SIAHs | 97 | 134 | - | - | |
| Mupr12282g00004 | 324 | SUPERFAMILY | TRAF domain-like | 153 | 324 | - | - | |
| Mupr12282g00004 | 324 | MobiDBLite | consensus disorder prediction | 1 | 86 | - | - | |
| Mupr12282g00004 | 324 | MobiDBLite | consensus disorder prediction | 28 | 45 | - | - | |
| Mupr12282g00004 | 324 | ProSiteProfiles | Zinc finger SIAH-type profile. | 152 | 210 | IPR013010 | GO:0008270 | |
| Mupr12282g00004 | 324 | ProSiteProfiles | Zinc finger RING-type profile. | 99 | 134 | IPR001841 | - | |
| Mupr12282g00004 | 324 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 147 | 205 | IPR013083 | - | |
| Mupr12282g00004 | 324 | Coils | Coil | 16 | 47 | - | - | |
| Mupr12282g00004 | 324 | MobiDBLite | consensus disorder prediction | 69 | 86 | - | - | |
| Mupr12282g00004 | 324 | Pfam | Seven in absentia protein family | 142 | 301 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
| Mupr12282g00004 | 324 | SUPERFAMILY | RING/U-box | 98 | 140 | - | - | |
| Mupr12282g00004 | 324 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 | 30 | 324 | IPR044286 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mupr12282g00004 | Mupr-Chr12282 | 24547 | 26187 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mupr12282g00004 | 95 | 236 | C3H Transcription Factor Family | AT2G41980 | 31.447 | 8.47e-22 | 92.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mupr12282g00004 | K04506 | - | gmx:100778869 | 497.278 |