Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12237g00008 ATGGGAGGCGAAGGAGGGGTTGCGAAGAAGAATAAGAAGCATAAGAATAAGAATGCAAAATCTGGGGGTTTTGAGTCACTTGGTCTGAATCCCAATGTGTTCAGGGGAATCAAGCGCAAGGGCTACAAAGTCCCCACTCCAATTCAGCGCAAGACTATGCCCCTCATACTTTCCGGCTCCGACGTCGTTGCCATGGCTCGCACCGGCTCCGGCAAAACGGCAGCGTTTCTTGTCCCCATGCTCCACCGCCTCAACCAGCATCTCCCTCAGTCCGGAGTTAGAGCCCTCATTTTATCCCCCACTCGGGACTTGGCCCTTCAGACTCTCAAGTTCACCAAAGAGCTTGGCCACTTCACAGACCTTCGTGTTAGTTTGTTGGTTGGTGGAGACAGTATGGAGAGTCAGTTCGAGGAGTTAGCTCAGAGTCCCGACATTATTATTGCCACTCCTGGCAGGCTCATGCACCATTTGTCTGAGGTTGACGACATGTCCTTGCGCAGCGTCGAGTACGTTGTCTTTGACGAGGCCGATTGTTTATTCGGCATGGGTTTCGCAGAGCAGTTGCATAAGATTCTTGCTCAGCTCGGGGAGAATCGCCAGACCTTGCTTTTCAGTGCCACATTGCCCAGTGCGCTTGCCGAATTTGCCAAGGCTGGTTTAAGGGATCCTCAGCTTCTCCGCCTCGATTTGGAAACCAAAATTAGCCCTGACTTGAAGCTTGCCTTCTTCACTTTGAGGCAGGAGGAGAAGTACGCTGCTTTGCTGTATTTGCTCAGGGAGCATATTGGTTCTGATCAGCAGACTTTGATTTTTGTATCCACCAAACATCACGTGGAGTTTCTCAATGTTTTGTTTCGTGAGGAGGGTATTGAGCCGTCTGTATGTTATGGCGACATGGATCAAGATGCTCGCAAAATCCATGTATCTAGGTTTAGGTCTAGAAAGACAATGTTGTTAATTGTGACAGACATTGCAGCTCGAGGCATTGACATTCCATTACTTGATAATGTTATCAATTGGGACTTTCCTCCCAAGCCTAAAATATTTGTCCATCGAGTTGGAAGGGCTGCAAGGGCTGGTCGAACTGGTACTGCATATTCTTTTGTGACTCCTGAGGACATGGCTTACGTTTTGGATCTTCATTTGTTTCTTTCAAAACCAATCAGACCTGCTCCCACCGAAGAAGAGGTCTTGCAGGATATGGATGGAGTTATGTCTAGATGTGAACAGGCGATGGCAAATAGAGAAACCATTTATGGTCGTTTCCCACAAAAAGTCATCGACCTTGTTTCAGACAGAGTTAGGGAAATTATTGATACTTCTGCGGAACTGGAATTATTGCAGAGAACCTGTAAAAATGCATTTCGTTTATATTCAAAAACAAAACCCTTACCTGCAAAGGAGTCCATTAGGAGGGCAAAGGATTTGCCTCGTGAAGGGCTGCATCCGATGTTCATGAAAGTGTTGGAAACAGGGGAGTTAACGGCACTTGCATTTTCTGAGCATTTGAAAAAGTTTAGGCCAAAGCAGACCATTTTGGAAGCTGAAGGGGAAGCAGCTAAATCAAAGCATCAACAGGGCCCTTCAGGCCAATGGGTTGATGTGATGAAAAGGAAAAGAGCCATTCATGAGAATGTTATAAATTTGTTTCGTGAACAGAAGCAATCTAAGAAGAGTAATAACGAAATGGAGGAAATTCAATCGGAAATCAGTCCTTCCATGGAGAAAGGAAGAAAAGCACGTGGTTCTAAGAGAAAGCCACAAAGTTTCAAGGATGAGGATCACTATATAAGTTCAATACCAAAAAATCAACATATGGAGGCTGGCCTTTCAGTAAAAGCTAATGAAGACTTTGCTTCAAATAGATTGGAAGCAGCTGTCCTCGATCTAGTGGCAGATGATGGTTCTGGCATTAAGAAACAAAGATCTATGTATCACTGGGATAAGAGGAGTAAAAAGTACATCAAGTTAAACAATGGTGACCGTGTTGCAGCAAATGGAAAGATAAAGACAGAGAGTGGTGCAAAAACGAAGGCCACCAAGACTGGTATATATAAGAAGTGGAAAGAACGCTCACACGGTAGGATATCTCTTAAAGGAACAAATAATGATGGTGATCATGACCCTCAGGCATCGACAAGTTTGACAGGATCTTACCGAGGAGGTCGTAGGAATTTTAAAGGCAGCAAGAAGCAGCATTCAATGCCGAATGCTCATGTGCGTTCAGAAATCAAAGATATGGATCAAATTCGAAAGGAGAGGCAGACAAAGGCTAACAAGATTTCTTATATAAAGAGCAAGTCGACAAAGGGTAAAAAGTTTGGTGGTAGAAATGTCGAAGAATTATGCGGTACTATGATTATTGCTGCAATTTGA 2376 0.4449 MGGEGGVAKKNKKHKNKNAKSGGFESLGLNPNVFRGIKRKGYKVPTPIQRKTMPLILSGSDVVAMARTGSGKTAAFLVPMLHRLNQHLPQSGVRALILSPTRDLALQTLKFTKELGHFTDLRVSLLVGGDSMESQFEELAQSPDIIIATPGRLMHHLSEVDDMSLRSVEYVVFDEADCLFGMGFAEQLHKILAQLGENRQTLLFSATLPSALAEFAKAGLRDPQLLRLDLETKISPDLKLAFFTLRQEEKYAALLYLLREHIGSDQQTLIFVSTKHHVEFLNVLFREEGIEPSVCYGDMDQDARKIHVSRFRSRKTMLLIVTDIAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAYSFVTPEDMAYVLDLHLFLSKPIRPAPTEEEVLQDMDGVMSRCEQAMANRETIYGRFPQKVIDLVSDRVREIIDTSAELELLQRTCKNAFRLYSKTKPLPAKESIRRAKDLPREGLHPMFMKVLETGELTALAFSEHLKKFRPKQTILEAEGEAAKSKHQQGPSGQWVDVMKRKRAIHENVINLFREQKQSKKSNNEMEEIQSEISPSMEKGRKARGSKRKPQSFKDEDHYISSIPKNQHMEAGLSVKANEDFASNRLEAAVLDLVADDGSGIKKQRSMYHWDKRSKKYIKLNNGDRVAANGKIKTESGAKTKATKTGIYKKWKERSHGRISLKGTNNDGDHDPQASTSLTGSYRGGRRNFKGSKKQHSMPNAHVRSEIKDMDQIRKERQTKANKISYIKSKSTKGKKFGGRNVEELCGTMIIAAI 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12237g00008 791 SMART DBP10CT_2 629 691 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Mupr12237g00008 791 SMART helicmild6 279 360 IPR001650 -
Mupr12237g00008 791 SMART ultradead3 41 248 IPR014001 -
Mupr12237g00008 791 Pfam DEAD/DEAH box helicase 46 213 IPR011545 GO:0003676|GO:0005524
Mupr12237g00008 791 MobiDBLite consensus disorder prediction 552 578 - -
Mupr12237g00008 791 CDD SF2_C_DEAD 245 369 - -
Mupr12237g00008 791 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 8 693 - -
Mupr12237g00008 791 MobiDBLite consensus disorder prediction 703 720 - -
Mupr12237g00008 791 Coils Coil 549 569 - -
Mupr12237g00008 791 MobiDBLite consensus disorder prediction 694 757 - -
Mupr12237g00008 791 Gene3D - 6 229 IPR027417 -
Mupr12237g00008 791 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 250 399 IPR001650 -
Mupr12237g00008 791 MobiDBLite consensus disorder prediction 1 24 - -
Mupr12237g00008 791 Pfam Helicase conserved C-terminal domain 249 360 IPR001650 -
Mupr12237g00008 791 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 22 50 IPR014014 GO:0003724
Mupr12237g00008 791 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 378 IPR027417 -
Mupr12237g00008 791 CDD DEADc_DDX54 22 227 IPR033517 -
Mupr12237g00008 791 MobiDBLite consensus disorder prediction 552 594 - -
Mupr12237g00008 791 Gene3D - 241 469 IPR027417 -
Mupr12237g00008 791 MobiDBLite consensus disorder prediction 736 757 - -
Mupr12237g00008 791 Pfam DBP10CT (NUC160) domain 629 690 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Mupr12237g00008 791 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 53 226 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12237g00008 Mupr-Chr12237 37289 46006 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12237g00008 14 393 Eukaryotic Initiation Factors Gene Family AT1G72730 32.461 6.88e-60 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12237g00008 K14808 - gmx:100806274 1404.42