Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12221g00003 ATGGACGCTCGTGAGCCGCCCCGGCCACCGCCGCCGACCATGATGACGGGGCCCGCCTCCTACGCCTCCGCCAACTCGTCCCCCATCGTCGGCCCTAATTCCTCCGCCACCATGATGGCCCCCGCCACCGCGCGATTCCCCTTCGGTGCCGTGCCGCAGCAGCAGCCTCCGCCTCCGCCCATGTCCGAGCCCTTCCCCCCCGCCGTGGCCTACGACGGCCCCTCCTCGCCGATGAAGCCCTGCGCCCTCGCCAAGAAGAAGCGTGGCCGCCCCCGGAAGTACTCGCCGGACGGTAACATTGCCCTCGGCCTCGCTCCCACCCACGTCTCCCCTCCCCCCGCCGGCGATTCGGCCGGCACGGCATCCGCTGAGGGTCCGGCGAAGAAGCACCGCGGAAGGCCTCCCGGCTCTGGGAAGAAACAGCTGGATGCGCTAGGAGCTGGTGGGGTTGGATTCACTCCCCACGTAATCATGGTGGAGTCTGGCGAGGACATCACAGCAAAACTTATGGCCTTTTCTCAGCAAGGGCCTCGCACAGTTTGTATTCTTTCTGCTATTGGTGCAATCTGTAATGTCACCCTTCGACAGCCTGCATTATCTGGTGGTACTGCTACGTACGAGGGCCGCTTCGAGATTATATCTTTATCAGGTTCTTTGCAGCTATCTGAAAATAATGGTGAACGTAGCAGAACGGGCACTTTGAATGTAACCCTTGCAGGGTCTGATGGACGTGTTTTGGGGGGCGGAGTTGCTGGAATGCTAACCGCAGCATCAACTGTACAGGTGATTGTGGGTAGCTTTATTGCGGATGGGAAAAAGTCGAGCTCGAATGTCCTGAAATCTGGGCCTTCTTCCGCACCAGCCCCCCAAATGCTAACCTTTGGTGCACCTATGACTCCAACTAGTCCTACCTCTCAAGGGCCTTCAACTGAGTCTTCTGAGGAAAATGATCATAATCATTTTTGTAGGCCCCCACCTGGACCTGGACCTGGACTCTTCAATAATGCTAGTCAGCCCGTTCATAATATGCCCATGTACCATCACCCACTATGGGCTGGCCAAACTCATCAGTGA 1074 0.5838 MDAREPPRPPPPTMMTGPASYASANSSPIVGPNSSATMMAPATARFPFGAVPQQQPPPPPMSEPFPPAVAYDGPSSPMKPCALAKKKRGRPRKYSPDGNIALGLAPTHVSPPPAGDSAGTASAEGPAKKHRGRPPGSGKKQLDALGAGGVGFTPHVIMVESGEDITAKLMAFSQQGPRTVCILSAIGAICNVTLRQPALSGGTATYEGRFEIISLSGSLQLSENNGERSRTGTLNVTLAGSDGRVLGGGVAGMLTAASTVQVIVGSFIADGKKSSSNVLKSGPSSAPAPQMLTFGAPMTPTSPTSQGPSTESSEENDHNHFCRPPPGPGPGLFNNASQPVHNMPMYHHPLWAGQTHQ 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12221g00003 357 Pfam Plants and Prokaryotes Conserved (PCC) domain 154 267 IPR005175 -
Mupr12221g00003 357 MobiDBLite consensus disorder prediction 18 40 - -
Mupr12221g00003 357 MobiDBLite consensus disorder prediction 1 143 - -
Mupr12221g00003 357 CDD DUF296 153 267 IPR005175 -
Mupr12221g00003 357 MobiDBLite consensus disorder prediction 295 312 - -
Mupr12221g00003 357 Gene3D - 154 279 - -
Mupr12221g00003 357 SMART AT_hook_2 128 140 IPR017956 GO:0003677
Mupr12221g00003 357 SMART AT_hook_2 85 97 IPR017956 GO:0003677
Mupr12221g00003 357 MobiDBLite consensus disorder prediction 51 73 - -
Mupr12221g00003 357 SUPERFAMILY AF0104/ALDC/Ptd012-like 152 268 - -
Mupr12221g00003 357 ProSiteProfiles PPC domain profile profile. 148 288 IPR005175 -
Mupr12221g00003 357 MobiDBLite consensus disorder prediction 1 16 - -
Mupr12221g00003 357 MobiDBLite consensus disorder prediction 273 288 - -
Mupr12221g00003 357 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 50 316 IPR039605 GO:0003680
Mupr12221g00003 357 MobiDBLite consensus disorder prediction 273 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12221g00003 Mupr-Chr12221 11186 15856 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12221g00003 84 357 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 50.160 2.09e-77 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12221g00003 - - gmx:100789717 533.102