Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12199g00001 ATGGCTGAGAAGATGCCTGATTCCAGCAGACCAGAGATGACTAGAAGCTCCTCCTATCTAGATTCCATTTACGGCAAAGGTTCCCTTGAGCTGGCATGGGGAAATGGTCAACTTCACGTGCAGCAAGGAGGTTCATCATCAAGTGCCACACGAATGACTCCCTCGTGCGATGAAGGTTCCCTCAACGCAAGAAGTGCAAGGTTAAGCTCACTATACGACTTACCAGTTCAAAAGGACTCTGGCCACGACAATTCACAACGAAATTCTCATCAAAGCAATGATCAAAATTCTCTTCAGCTTGCTTTAGAACGAGTAGAGGAGATTAAAGCTAGATGGTTTGCAAAGGCTGCTTCTAGCAGCAAAGGTCCTGATCATTCTTTAGTGATCGACTCGTCCAAAGGATCACAAATTCTCACAGGACTTGAAAGGCAAAACCCTTTAATTTCTGATGCATCAAACTCGGTTCCAAGAAGTGAGGAAACACCTCCTGACGAGCAATCCGAAGCTGTTGGCCATAACAGTGCCATTAGTATTCACGGTCAATATTACAACCAAACAAGCTCAGCAGGACTTAAAGCAAAGGGAAAAGCTGATACTAAATACTTTGATGAAGCCTTGTTAGAATCTTCTTCCCTATGCTCCCTTGGAGCCTCAAATAACAGAAACGTTTGTAGCAGCAGGAAACATGATGACATCCATGACTCGACGTATTTAAGTGATAATGATGAAGAACCAGAAGATGTAGCAAAGGAAAAGCCTGCTCGGGAAGGCACCGGAGTCAAGAGAAGTAGGAATTCAGAAACTCATAATTTATGTGAAAGGAAGCGAAGAGATAAGATCAACAAGAGGATGCGTATGTTAAAGGAGCTCATACCCAATTGCAATAAGATGGATAAAGCTTCAATGCTTGACGATGCCATCGAGTATCTTAAGACCCTAAAGCTTCAGTTACAGATTATGACAATGAGTGCTGGATTTTGTATGCCGTTTATGATGTTACCTAATGCCACTCATCCTATGATGAACACACCCCATTTACATCAGTTAATGGGAGTTGGAATGGGGTTCAGGCCAGGCACAGCCATCCCTTGCAGCCTACCTCAGTTCCCTATTACACCTTTGCCAGCTGGTATCACTGACAACACTGTTCAGATGTTTGCTTTCCCTAACCAAGTGCCACACATGCCAATTTCTCATGCTCCTTTCATTCCAATGGTTGGAAATTCTTCTACACAACCCCCTCTGGCAACTAGCACAACTACCAACCTTGCAGAGAACCCTGCTTCTTCCCAGTTAACTACTCTAATGGCCTCAGTCCCCAAGAACTCACATCTTAGTGAACAAGCTGAATATGCAACAATCAGGTTTCCCTTCACCACTAGCCATCAATTTGTATCCCACAAAGAAGATAAAAATTAG 1419 0.4362 MAEKMPDSSRPEMTRSSSYLDSIYGKGSLELAWGNGQLHVQQGGSSSSATRMTPSCDEGSLNARSARLSSLYDLPVQKDSGHDNSQRNSHQSNDQNSLQLALERVEEIKARWFAKAASSSKGPDHSLVIDSSKGSQILTGLERQNPLISDASNSVPRSEETPPDEQSEAVGHNSAISIHGQYYNQTSSAGLKAKGKADTKYFDEALLESSSLCSLGASNNRNVCSSRKHDDIHDSTYLSDNDEEPEDVAKEKPAREGTGVKRSRNSETHNLCERKRRDKINKRMRMLKELIPNCNKMDKASMLDDAIEYLKTLKLQLQIMTMSAGFCMPFMMLPNATHPMMNTPHLHQLMGVGMGFRPGTAIPCSLPQFPITPLPAGITDNTVQMFAFPNQVPHMPISHAPFIPMVGNSSTQPPLATSTTTNLAENPASSQLTTLMASVPKNSHLSEQAEYATIRFPFTTSHQFVSHKEDKN 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12199g00001 472 Pfam Helix-loop-helix DNA-binding domain 267 313 IPR011598 GO:0046983
Mupr12199g00001 472 MobiDBLite consensus disorder prediction 219 278 - -
Mupr12199g00001 472 MobiDBLite consensus disorder prediction 39 101 - -
Mupr12199g00001 472 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 267 340 IPR036638 GO:0046983
Mupr12199g00001 472 SMART finulus 270 319 IPR011598 GO:0046983
Mupr12199g00001 472 MobiDBLite consensus disorder prediction 79 100 - -
Mupr12199g00001 472 CDD bHLH_AtPIF_like 264 326 IPR047265 -
Mupr12199g00001 472 MobiDBLite consensus disorder prediction 224 277 - -
Mupr12199g00001 472 Gene3D - 257 314 IPR036638 GO:0046983
Mupr12199g00001 472 MobiDBLite consensus disorder prediction 142 170 - -
Mupr12199g00001 472 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 264 313 IPR011598 GO:0046983
Mupr12199g00001 472 MobiDBLite consensus disorder prediction 142 160 - -
Mupr12199g00001 472 PANTHER TRANSCRIPTION FACTOR PIF3 91 442 IPR044273 GO:0003700|GO:0006355
Mupr12199g00001 472 MobiDBLite consensus disorder prediction 39 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12199g00001 Mupr-Chr12199 1420 3320 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12199g00001 148 397 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46970 38.577 1.73e-36 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mupr12199g00001 HLH 8.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12199g00001 K12126 - gmx:100818543 639.032