Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1218g00001 AGTTATATTGCTGGTTCCCTTGCTATGGCTGCCACAGCAACTGCCATGGGTCCACGGTATGCACCAGCTGACCCAACACTCCCTAAACCATGGCGGGGTCTTGTGGATGGCAAGACTGGGTATCTTTACTTTTGGAATCCTGAGACTAATGTCACCCAGTATGAGAGGCCCTCAAGCTCAGCTGCCCTCCCAAAGTCTTCTTCAGTTCCTAGTTCTTCTGTCCAGGTTCAGCAATCGTCTCAAGGGCGTGGCCGCAGTCCTGAATTCAGTGATAGGTATGATAGAAATGGCAGTGGTGGGTCAAACGAAGCTGGATCACGGAACCATCAGAGTTCCAAAGGTGGAAGTTATAGTTCTCATCATGTTCCAAATGGAACAAATGTTGCTGGCAATGTTAATTCTTCTGTCAGAAGCCATGGGGCTTCGGATGCTGGAGCTGGAGTATCTCCCGAGTCTTATCGACAACGGCATGAAATAACTGTAACTGGAGACAACGTGCCTCCGCCCCTTGCATCATTTGGATCTACTGGCTTTCCATCTGAGATTCTGAGAGAGGTACAAAACGCTGGGTTCTCAGCCCCAACTCCAATTCAGGCACAGTCATGGCCAATTGCTCTTCAAAGTAGAGATATAGTTGCCATTGCTAAAACAGGCTCAGGGAAAACCTTGGGGTATTTAATTCCGGCATTTGTTCACCTCAAGCGTACTGGTAATAACTCCAAAATGGGCCCCACTGCATTGGTACTTTCACCAACAAGGGAGTTGGCAACGCAGATACAAGACGAAGCTGTGAAATTTGGGAAATCATCAAGAATTTCTTGTGCATGCTTGTATGGAGGAGCACCGAAGGGTCCTCAACTGAGAGACATTGACCGTGGGGCAGATATTGTGGTAGCCACTCCTGGTCGTTTGAATGATATTCTTGAGATGAGAAGAATTAGTCTTCATCAGGTATCTTACCTGGTGCTAGATGAGGCAGACAGGATGCTGGATATGGGTTTTGAACCTCAAATTAGGAAAATTGTGAATGAGGTGCCTAATCGTAGGCAAACTCTCATGTTTACTGCAACATGGCCAAAGGAGGTTAGGAAAATTGCAGCTGATCTGCTAGTCAAGCCTGTCCAGGTGAACATTGGCAACGTAGATGAGCTTGTTGCTAACAAGTCCATTACTCAGCATGTTGAAGTATTGCCACCAATGGAGAAACAGAGACGACTGGAACATATTTTGCGGTCACAGGATCATGGATCTAAGATAATTATCTTTTGTTCTACCAAGAAAATGTGTGATCAACTTGCTCGTAATCTGACACGTCAGTTTGGAGCTGCTGCTATTCATGGGGATAAATCCCAGGCTGAGAGGGATCACGTGTTGAATCAGTTTCGAACTGGGAGGTCTCCTGTGCTAGTAGCCACAGATGTTGCTGCTCGGGGACTGGATATCAAAGACATCAGGGTGGTTGTCAATTATGACTTCCCTACAGGAGTGGAAGATTATGTTCATAGGATTGGAAGGACTGGGAGAGCTGGAGCCACTGGGCTTGCTTACACTTTCTTTGGTGACCAGGATGCTAAATATGCTTCAGATCTCATCAAAGTTCTGGAAGGTGCAAACCAGAAGGTACCTCCAGAACTTCGTGATATGTCATCTAGGGGTGGTGGTGGGATGGGCAGATCCAGAAGATGGGGTTCTGGTGGACGAGGTGGACGTGGTGATTCTGGATATGGTGGAAGGAATAATGACTCGGGATATGGTGGAAGGGGTAACGATGCAGGATATGGTGGAAGAGGTAGTGATTCAAATTATGGAGGGAGGGGGACCTCTGGCAGAGGTGGAGGCCGTGGATTTGACTATGACTCACAGAGGAATGATCGGGGTCGGAGCCCAGACAAGGGATCTAGTTGGAGTGATCGCTACAAAAGTGTCAACCGGGAACGGAGTCGCAGTCGTAGTCCTGACAGGGCTGTACTACCTCAACATTCCCAAGGCAGCTTTCACAAGGCAATGATGGAACGAGGTAGTGGAGGAGGAGGAGGAGGAGGAGGGGACAATGATCGTAATAAGAGCTTTAACCGTGAACGAAGCCGCAGTCATAGCCCTCATAAACAGGAGAGGGTCCCAGCAGTTCGTGAACGTTCCCCAGTTTACAGTTTTCATCGATCAATGATGTCACAAGGTCATTCATCCCCTTCAACTCAACGGCATCGTCCACCCCATTACAGTGATGATGGTTCTAAAGAAGAAAAAAGTTCTAGATATGCACGCAGTCCTAACCGAAACTCACCCTCCTCCCTTCTTGGTGGTGGTGGTGGTGGTAGGTCTAATAATAGTCCTCCTACAAAAGAATGGGGGGGTGATGGAAGATATGGTGGATCTCATTCATCTTACAATGGAGAAGTGGAGGAAGGGATGATTCCCGAGGAAGAAGGAATGATAGGTCAAGATGATCCTATATATCAAAGAGTGGATTAG 2472 0.4757 SYIAGSLAMAATATAMGPRYAPADPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPSSSAALPKSSSVPSSSVQVQQSSQGRGRSPEFSDRYDRNGSGGSNEAGSRNHQSSKGGSYSSHHVPNGTNVAGNVNSSVRSHGASDAGAGVSPESYRQRHEITVTGDNVPPPLASFGSTGFPSEILREVQNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPAFVHLKRTGNNSKMGPTALVLSPTRELATQIQDEAVKFGKSSRISCACLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPNRRQTLMFTATWPKEVRKIAADLLVKPVQVNIGNVDELVANKSITQHVEVLPPMEKQRRLEHILRSQDHGSKIIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQAERDHVLNQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKYASDLIKVLEGANQKVPPELRDMSSRGGGGMGRSRRWGSGGRGGRGDSGYGGRNNDSGYGGRGNDAGYGGRGSDSNYGGRGTSGRGGGRGFDYDSQRNDRGRSPDKGSSWSDRYKSVNRERSRSRSPDRAVLPQHSQGSFHKAMMERGSGGGGGGGGDNDRNKSFNRERSRSHSPHKQERVPAVRERSPVYSFHRSMMSQGHSSPSTQRHRPPHYSDDGSKEEKSSRYARSPNRNSPSSLLGGGGGGRSNNSPPTKEWGGDGRYGGSHSSYNGEVEEGMIPEEEGMIGQDDPIYQRVD 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1218g00001 823 MobiDBLite consensus disorder prediction 718 735 - -
Mupr1218g00001 823 SMART helicmild6 430 510 IPR001650 -
Mupr1218g00001 823 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 405 549 IPR001650 -
Mupr1218g00001 823 MobiDBLite consensus disorder prediction 736 754 - -
Mupr1218g00001 823 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 243 527 IPR027417 -
Mupr1218g00001 823 Gene3D - 22 71 - -
Mupr1218g00001 823 SUPERFAMILY WW domain 17 58 IPR036020 GO:0005515
Mupr1218g00001 823 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 202 376 IPR014001 -
Mupr1218g00001 823 ProSitePatterns WW/rsp5/WWP domain signature. 31 57 IPR001202 GO:0005515
Mupr1218g00001 823 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 171 199 IPR014014 GO:0003724
Mupr1218g00001 823 MobiDBLite consensus disorder prediction 55 86 - -
Mupr1218g00001 823 CDD WW 28 57 IPR001202 GO:0005515
Mupr1218g00001 823 MobiDBLite consensus disorder prediction 755 781 - -
Mupr1218g00001 823 MobiDBLite consensus disorder prediction 95 140 - -
Mupr1218g00001 823 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 130 549 - -
Mupr1218g00001 823 FunFam ATP-dependent RNA helicase RhlB 380 552 - -
Mupr1218g00001 823 ProSiteProfiles WW/rsp5/WWP domain profile. 25 59 IPR001202 GO:0005515
Mupr1218g00001 823 SMART ww_5 26 59 IPR001202 GO:0005515
Mupr1218g00001 823 MobiDBLite consensus disorder prediction 541 823 - -
Mupr1218g00001 823 Pfam Helicase conserved C-terminal domain 402 510 IPR001650 -
Mupr1218g00001 823 SMART ultradead3 190 393 IPR014001 -
Mupr1218g00001 823 Pfam DEAD/DEAH box helicase 195 365 IPR011545 GO:0003676|GO:0005524
Mupr1218g00001 823 FunFam probable ATP-dependent RNA helicase DDX17 145 379 - -
Mupr1218g00001 823 Gene3D - 148 380 IPR027417 -
Mupr1218g00001 823 MobiDBLite consensus disorder prediction 686 709 - -
Mupr1218g00001 823 Gene3D - 381 551 IPR027417 -
Mupr1218g00001 823 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 322 330 IPR000629 -
Mupr1218g00001 823 MobiDBLite consensus disorder prediction 617 653 - -
Mupr1218g00001 823 CDD SF2_C_DEAD 390 519 - -
Mupr1218g00001 823 MobiDBLite consensus disorder prediction 55 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1218g00001 Mupr-Chr1218 4275 8524 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1218g00001 169 548 Eukaryotic Initiation Factors Gene Family AT3G19760 33.333 6.75e-65 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1218g00001 K12823 - gmx:100816455 1226.08