Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12167g00005 ATGGGCGAAGAAGAGAAGCAACAGAGCGGGCCGGTTCTGCCATGGATGCGGCACCCCGTGGACATCACTCGCTGTGAAGAACTCCCCGTCGGTAGGGTTCCTTTTCTGGACTGCAGGTTAATGTCGGCACTAGAGAACATGGGAATCTCCAAACTGTTCCCGGTTCAAGTTGCAGTTTGGCAAGAAACAGTTGGACCGGGTAACTTTGACCGAGACCTTTGCATAAACTCGCCCACCGGAAGCGGCAAAACGTTGGCCTACGCTCTTCCCATCGTGCAAAAGCTATCCACTCGTGCCTTCAAGTGCCTTCGTGCTCTGGTTGTGGTCCCCACCCGCGACCTTGCCTTCCAGGTTAAACAGGTTTTTGATTCCCTTGCATCGCCAGTAGGCCTGCGTGTTGGCTTGGCTGTTGCTCAATCTTCTCTGGCTGATGGGAGCTTTGTTTATGTGCCGGGACAAGATGAAGACATGGGCATGTCCTATGATGTTTCGTTTCGGTTCCCTGTCCAAAGTAAGGTGGAGATATTGATTGCAACTCCTGGAAGACTCATGGATCTCGTCAATTCAGCCCCAGACACAGGCTTCACACTGGAGCATCTTTATTATCTTGTAGTTGATGAAACAGATCGGCTGCTCAGGGAAGACTATCAATCCTGGCTGCCTACTGTGCTTAAATTGTCTCAATCCAATGATGATGATGTTTTTCAATCAGGTTTCCCTTATTCTCCTTGGGGTGCATTGAGAACCATAAGAAGATGTGGTGGAGTTGAGAGGGGGTTCACACCGTACCCTAGGCTCACAAAGATGGTCCTATCTGCAACGTTAACTCAGGACCCAGGCAGGCTTGTTCAGCTTGATTTGCATCATCCTTTGTTCCTGAGCACTGGGAAAATGCGTTATCAGCTCCCAGAAAATTTGGAATCTTACAAATTGATCTGTGAAAGAAAGGTCAAACCCTTGTATTTGGCTGCCCTTTTGAAATCCCTGGGAGAAGAAAAATGCATAGTTTTTACAAAATCTGTGGACTCAACACGTCGTCTCTGCAAATTGCTGAATTGTTTTGAAGATCTGCAAATTGATATCAAGGAGTATTCTGGTCTTCAACATCAACGTATAAGAAGCAAGACACTGAATGAATTTCGGAAAGGGGAGTTTCAAGTGCTTGTATCCTCTGATGCAATGACTCGTGGAATGGATGTTGAAGGGGTAAGAAATGTCATTAATTATGACATGCCCAAATACATAAAGACTTATGTTCATCGGGCTGGTAGGACTGCAAGAGCTGGCCAGGCTGGGCGCTGCTTCACATTAATGTCAGAAGATGAGGTTGGACGATTTAAGAAGTTGATGAAAAAGGCTGAGGCTAGTGCTTGTCTTGAGCATACTGTTCCATCTAGTTTGATTGAAGCACTTCATACTTCCTACCAATCAGGTGTATATTCACAAACCCCTTTCTCAACCATTGCTGTGGTATCTTCCATTGTTGGCAGCACTGACAAAATTGAAGGCGATAATTTTGGAGAGCCGGAAGAAACCTAA 1539 0.4633 MGEEEKQQSGPVLPWMRHPVDITRCEELPVGRVPFLDCRLMSALENMGISKLFPVQVAVWQETVGPGNFDRDLCINSPTGSGKTLAYALPIVQKLSTRAFKCLRALVVVPTRDLAFQVKQVFDSLASPVGLRVGLAVAQSSLADGSFVYVPGQDEDMGMSYDVSFRFPVQSKVEILIATPGRLMDLVNSAPDTGFTLEHLYYLVVDETDRLLREDYQSWLPTVLKLSQSNDDDVFQSGFPYSPWGALRTIRRCGGVERGFTPYPRLTKMVLSATLTQDPGRLVQLDLHHPLFLSTGKMRYQLPENLESYKLICERKVKPLYLAALLKSLGEEKCIVFTKSVDSTRRLCKLLNCFEDLQIDIKEYSGLQHQRIRSKTLNEFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQAGRCFTLMSEDEVGRFKKLMKKAEASACLEHTVPSSLIEALHTSYQSGVYSQTPFSTIAVVSSIVGSTDKIEGDNFGEPEET 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12167g00005 512 Pfam DEAD/DEAH box helicase 54 279 IPR011545 GO:0003676|GO:0005524
Mupr12167g00005 512 Gene3D - 305 467 IPR027417 -
Mupr12167g00005 512 Pfam Helicase conserved C-terminal domain 318 429 IPR001650 -
Mupr12167g00005 512 SMART helicmild6 345 429 IPR001650 -
Mupr12167g00005 512 PANTHER RNA HELICASE 36 453 - -
Mupr12167g00005 512 SMART ultradead3 48 309 IPR014001 -
Mupr12167g00005 512 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 64 293 IPR014001 -
Mupr12167g00005 512 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 321 471 IPR001650 -
Mupr12167g00005 512 Gene3D - 18 304 IPR027417 -
Mupr12167g00005 512 CDD DEADc_DDX51 40 294 - -
Mupr12167g00005 512 CDD SF2_C_DEAD 306 437 - -
Mupr12167g00005 512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 450 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12167g00005 Mupr-Chr12167 37491 41333 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12167g00005 58 442 Eukaryotic Initiation Factors Gene Family AT3G13920 22.597 1.27e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12167g00005 K14807 - qsa:O6P43_013012 630.557