Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12159g00002 TCTAAAGAATGTTCAGTCTGCAGTCACAGTTCTGTGAGACATTTCTGTTGGTGGAATAAAAACATAGTATTAAGGCGCACTAAAATAGGCAGGGCTGCGGATCTTGCACTTCCACCTAGAATTGTTGCGTTGAGAAGGGATTGCCTGGATATTAAAGAGCAAGACTATTATGAATCATTATACAATGAAAGTCAGGCACAATTTAATACATATATTGAAGCAAATACTCTGATGAATAATTATGCTCATATATTTGATCTCCTCACACGATTGCGTCAGGCTGTTGATCATCCATATCTTGTGGTATATTCTCAAAGTGCAGCATCAAGAAATGGAATTATGACAAGTAATGCTACTGTGGAACAAGTTTGCGGCATTTGCCATGAGCCAGTGGACGAAGATCTTGTGGTTACCTCTTGTGAGCATGGATTTTGCAGGGCATGCTTGATAGACTTCTCAGCTTCCTTTGGACGAGTATCATGCCCCACATGTTCTAAATTACTTACTGTTGATTTAACATCCAACAAGGATGTTGGGGATCAAGCTAATAAAACAACAATTAAGGGTTTCAGATCCTCAAGCATTTTGAATAGAATTCGCCTTGAGAACTTTCAGACAAGCACTAAAATAGAAGCTTTGAGAGAAGAAATAAGATTCATGGTTGAAAGGGATGGTTCTGCCAAAGGGATTGTTTTTAGCCAATTCACATCATTCTTGGACCTTATAAACTACTCTTTGCACAAGTCTGGAGTATCTTGTGTTCAGTTGAATGGAAGCATGTCATTGGCTGCTCGGGATGCTGCCATTAGGAGATTCACTGAAGATCCAGACTGCAAAATTTTTCTTATGAGCTTGAAGGCTGGGGGTGTTGCACTTAATTTGACAGTAGCTTCACATGTCTTCCTTATGGACCCTTGGTGGAACCCGGCTGTGGAGCGTCAGGCTCAAGACAGAATTCACAGAATAGGGCAATATAAACCTATAAGAATTGTGAGGTTTGTCATTGAGAACACAATCGAGGAGAGAATTCTGAAACTGCAAGAGAAAAAGGAACTAGTGTTCGAAGGGACTATAGGTGGCTCTTCTGATGCTCTAGGGAAATTGACTGAGGCAGATATGAGATTCTTATTTGGTTTTCGTTCCATTCCCATCGAGCGAGAGGAAAGAAAAAAAATGTTGCAGCTTCTGTACGCGGTGATATTTGGTGAAATGTTTGTGATCGTGAGCTTCCTCTTCAAAACTCCCGTGAGGAAGCTTGTGATCATCACATTGGATCGGGTCAAGCGAGGTCGGGGTCCCGTCATCGTGAAGACCGTCACCGCCACGTTGTTGGTGGTGCTCGCTTCCTCTCTTTACAGCATCGTCAAGATCCAGCGTCGCGCTCTCGACGCTGCCGTCGTCAACACCACCGACCAAGTCCTCATGTCTAAGCACATGCTCGAAGCTTCTCTTTTGGGGTTTGTGTTGTTCCTGTCTCTGATGATAGATAGATTACACCATTACATCAGAGAGCTTCGGTTACTGAGGAAGGCCATGGAGGCTGCTAAGAAACAGAGTCGAAGTTTTGAGGACGGTAAAAGTGTCAGTGCAGCGGAGCACAAGGCGTTGGTGGAAGAAATTGGCACGTTGAAGCCCCAAATCAAGAAACTGGAATCTGAGTGTGAGGTGAAAGCAAGCAAGGCTAAGGCATTGGAAGATGAGGTGGAGGCTCTTAGAAAGCAATCTGAGGGTTTCCTTATGGAATATGATCGCCTCTTGGCAGACAATCAGAATCTTCGGAGTCAGTTGCAGGCTATTGACCACAGCTCTTCTCATTTTCTTAACAAAAAGGGCATG 1836 0.4352 SKECSVCSHSSVRHFCWWNKNIVLRRTKIGRAADLALPPRIVALRRDCLDIKEQDYYESLYNESQAQFNTYIEANTLMNNYAHIFDLLTRLRQAVDHPYLVVYSQSAASRNGIMTSNATVEQVCGICHEPVDEDLVVTSCEHGFCRACLIDFSASFGRVSCPTCSKLLTVDLTSNKDVGDQANKTTIKGFRSSSILNRIRLENFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVSCVQLNGSMSLAARDAAIRRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSSDALGKLTEADMRFLFGFRSIPIEREERKKMLQLLYAVIFGEMFVIVSFLFKTPVRKLVIITLDRVKRGRGPVIVKTVTATLLVVLASSLYSIVKIQRRALDAAVVNTTDQVLMSKHMLEASLLGFVLFLSLMIDRLHHYIRELRLLRKAMEAAKKQSRSFEDGKSVSAAEHKALVEEIGTLKPQIKKLESECEVKASKAKALEDEVEALRKQSEGFLMEYDRLLADNQNLRSQLQAIDHSSSHFLNKKGM 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12159g00002 612 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 192 IPR013083 -
Mupr12159g00002 612 FunFam B-cell receptor-associated protein 29 529 592 - -
Mupr12159g00002 612 Coils Coil 547 581 - -
Mupr12159g00002 612 CDD SF2_C_SNF 207 334 - -
Mupr12159g00002 612 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 385 IPR027417 -
Mupr12159g00002 612 Coils Coil 498 518 - -
Mupr12159g00002 612 Gene3D - 48 396 IPR027417 -
Mupr12159g00002 612 Pfam Helicase conserved C-terminal domain 209 323 IPR001650 -
Mupr12159g00002 612 SMART helicmild6 240 323 IPR001650 -
Mupr12159g00002 612 ProSiteProfiles Zinc finger RING-type profile. 124 165 IPR001841 -
Mupr12159g00002 612 SUPERFAMILY RING/U-box 117 171 - -
Mupr12159g00002 612 ProSitePatterns Zinc finger RING-type signature. 140 149 IPR017907 -
Mupr12159g00002 612 Pfam zinc-RING finger domain 124 166 IPR001841 -
Mupr12159g00002 612 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 205 369 IPR001650 -
Mupr12159g00002 612 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 20 378 - -
Mupr12159g00002 612 Gene3D - 529 592 - -
Mupr12159g00002 612 SMART ring_2 124 164 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12159g00002 Mupr-Chr12159 5448 11720 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12159g00002 2 377 RAD5 or RAD16-like Gene Family AT1G05120 72.277 0.0 623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12159g00002 K15083 - gmx:100786366 713.375