Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12090g00001 CTTATTTCTCTACTCCTTATATTTGTAATTGGCAGCATTACTATCTTCTACTTTGCCAAGGAAGAAGAAAAGTGTAGGTTTGTTCCATTATTTCCTGATGTATTTGAGCCGGTCACAATCCCCTTTCAGAAGGGAGTTGGCCAGAAATTTGCCCAGCCTTCAGGAACAGGAATTGACCTAGGCTTCTTTGAGTTGGATGATCTTTCAAAGCCCTCACCTGGAGAAGATGTCTTTCCTCTTGTAATATGTGCTGAAACAAGTTTGCAAACACCCTCAGCAGATGAAACTCCTGGTGATTCCTTGCTAGATGCATCCCCTCACATGCAAATAACTCAAGGTGTCTTAGAGAAAAGTAATGGTGGTGGTCCTTTCCTGATAAAAGTAGTTAGGCAGATTTTGTGGATTGATGGTGTTCGTTATGAGTTGAGAGAGTTATATGGAATAGGAAGCTCATCAGCTGCTGATTTTGATGACAATGATCCTGGGAAGGAGTGTGTCATATGCATGACTGAACCAAAGGATACTGCTGTTTTACCTTGTCGACATATGTGTATGTGTAGTGAGTGTGCAAAAGCTCTGCGAGTGCAATCCAATAAATGCCCTATATGCCGTCAGTCTATTGAGGAACTTATTGAGATCAAGTTGTATGGCATTACCAATAAATTCCTTTTAAGAAAATTCACCCCCGTTTTACATATCCGCAGTCAGTCAAAATCTGTTTATAGTTTTTGTGTGATGTGTTCGAGGGAAAAATCAGTGATTGAATGTTTCCTCCCGTGTCCAATTATATTGTACAGAATCAATTTTGGTGCAACACACTGCTCTCACAAGTGGTATGTTGCATTATTTGCGTTTGTGAGCTATCATGTGTTGCGAGGTACTGTT 885 0.4045 LISLLLIFVIGSITIFYFAKEEEKCRFVPLFPDVFEPVTIPFQKGVGQKFAQPSGTGIDLGFFELDDLSKPSPGEDVFPLVICAETSLQTPSADETPGDSLLDASPHMQITQGVLEKSNGGGPFLIKVVRQILWIDGVRYELRELYGIGSSSAADFDDNDPGKECVICMTEPKDTAVLPCRHMCMCSECAKALRVQSNKCPICRQSIEELIEIKLYGITNKFLLRKFTPVLHIRSQSKSVYSFCVMCSREKSVIECFLPCPIILYRINFGATHCSHKWYVALFAFVSYHVLRGTV 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12090g00001 295 SUPERFAMILY RING/U-box 159 212 - -
Mupr12090g00001 295 CDD mRING-HC-C3HC5_MGRN1-like 163 204 IPR045195 -
Mupr12090g00001 295 SMART ring_2 165 203 IPR001841 -
Mupr12090g00001 295 ProSiteProfiles Zinc finger RING-type profile. 165 204 IPR001841 -
Mupr12090g00001 295 Pfam Zinc finger, C3HC4 type (RING finger) 163 209 - -
Mupr12090g00001 295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 215 IPR013083 -
Mupr12090g00001 295 FunFam probable E3 ubiquitin-protein ligase LOG2 149 214 - -
Mupr12090g00001 295 PANTHER MAHOGUNIN 11 214 IPR045194 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12090g00001 Mupr-Chr12090 1024 3678 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12090g00001 11 215 C3H Transcription Factor Family AT3G06140 63.592 3.57e-83 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12090g00001 - - gmx:100808808 396.356