Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12076g00002 ATGCCGGTGAGGAAGTATTACTGCGATTACTGCGACAAGCAATTCCAAGACACACCAGGAGATCGGAAACGACACGCACAGGGTATTCAACACCAGCAAGCCAAAGCTCGCTGGTACGATTCCTTCAAACAACAAATCCCTCCTATTCCTAATCAACCCCTTTGCTTTCACTTCGTCAACACGGGATTTTGCCGTTACGGCCACTCTTGCAAGTATCTCCATCCCATTCTCAACAATAACATACAGCAGCAGGCCCCAATCATGAACACACCGTCACCAGGGAATGTGGTAGGAGTGTCATTGGGCAATCTGCCCCCGTCGCTGCAGCTTCCACCTGAGGGTGGATATCCCCATCTACCCTTTCTCGACTGGGGATAG 378 0.5079 MPVRKYYCDYCDKQFQDTPGDRKRHAQGIQHQQAKARWYDSFKQQIPPIPNQPLCFHFVNTGFCRYGHSCKYLHPILNNNIQQQAPIMNTPSPGNVVGVSLGNLPPSLQLPPEGGYPHLPFLDWG 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12076g00002 125 Gene3D - 50 95 - -
Mupr12076g00002 125 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 52 75 IPR000571 GO:0046872
Mupr12076g00002 125 Gene3D Classic Zinc Finger 3 49 - -
Mupr12076g00002 125 Pfam U1 zinc finger 4 39 IPR013085 GO:0008270
Mupr12076g00002 125 SUPERFAMILY CCCH zinc finger 50 76 IPR036855 GO:0046872
Mupr12076g00002 125 PANTHER NUCLEASE-RELATED 1 125 - -
Mupr12076g00002 125 SMART c3hfinal6 49 76 IPR000571 GO:0046872
Mupr12076g00002 125 ProSiteProfiles Zinc finger C3H1-type profile. 49 77 IPR000571 GO:0046872
Mupr12076g00002 125 SUPERFAMILY beta-beta-alpha zinc fingers 4 46 IPR036236 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12076g00002 42 101 C3H Transcription Factor Family AT1G04990 38.333 1.66e-06 43.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mupr12076g00002 zf-U1 3.1e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12076g00002 K13152 - gmx:100527203 228.024