LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr12057g00001	ACACGTTTAGCACTTGAAGAAGACAGGGTCATCAATTACTTGCTTGCAATTTGCAACAGAGCAAAGTGTCAAATCCTCTTTCTCTCTTCTCTTCTGAAGATGCAACTTCTTCAAGCCATCTTTTTCTCATTCTTGGTCATAACCATCATCCTAAATCAAATTCCAATATCTTCTTGTGCTGATAATGTGCATTATCTGAGATGTAGTTCTTCATTTCAATGTGCAAATCTCAAAAACCTGAGTTATCCTTTCTGGGGATTCAGTAGACCCCAATACTGTGGCCACCCTGCGTTTAAGCTACAATGCACAGGTGAAGTAGCAGCAGTTACCATCATGTCAGAGAGTTACAAAGTTCTTGAAGTCAGTGACTCTAATCATAGACTCAAAGTTGTAAGAACTGAAGTGCTAGAAACAAATTCAACAGTGGAAAATCTGAAGGACTCTCTTGATAGTGGTTTTGGTGTGGAGTGGGATGCAAACAATAGTTTGTGTGATGAATGCCAAAACTCTGGTGGGCATTGTGGTTATAACGTAAGCTCAAGTGAATTCTCTTGCTATTGCAGGGATGGATCTTTTCCATCTTCATGTAAATCAGACAAAGAAACCCCCACGAACAAACAACAAACCATGTTGTTCATCTGGTCCGCCAACATCATCATAGCCATCCTCATCACCTCTCTCCACCATACGACGTCGTTACCACCCCATGCATCACTCTCTAGCTGCCACGTCAGCTCCTTCAACTGCGGCGCCATCACCAACCTTTCCTACCCTTTCACCGGCGGTGACCGCCCCTCCTTCTGCGGGCCACCGCAGTTCCATTTGAACTGCCAAAACGGTGTCGTCCCGGAGCTGAACATCTCATCAGTGAGTTACCGAGTCATTGGTATCAACTCGGTGGCTCGCACCCTGACCTTAGCTAGATTAGACCTTTGGAACGAGACATGCACCCATGTGTACGTTAACTCAACTTTTGATGACCCCAGTTTCAGCTACGGTTTGGGGAACCAGAACCTCACCTTGTTTTATGAGTGCAAACCCACTTCAGCGTTCACCAAAACGCCCGCTAATTTGTTTCACTGCGAGAGTAACGGATATAAGAATAACTCTTATTCTTTGGTTGGTCCATTCCCTTTGGATCCTATTATTGGCGTTGTTGAATGTGATGAACATGTTGAGGTGCCAATTTTTGTAGAGCAAGCTGAAAGGCTCATAGAAAACCGGTCTTTGCTTGAGGAGGTTTTAATGAAGGGGTTTAATGTGAATTATACGAATATTTATGACAGTGAGTGCGTTGAGTGTCTTGGTTCTGGTGGCTACTGTGGCTTTGATTCTGATAACAATGAACCCATTTGTATTTGTGGGGATCACTTGTGTCCAACTCCAGATAAAAGAAGTAGTAAAGTAGGTGTTGTAATAGGCGTTACTGTAGGAGGAGTTGTGGTCCTTGTTGCCATTCTTGGATGTGTGTACTTTGTGATGCAAAGAAGGAGAAAAATTGCTTATAAGTCTCAAAGAAGCAGTGAGCTCTTCATGGCGCCTTTAAGCGGAGACACTTTTACATCTACAACTAATACGTCTCAAAGTGTCTCTTCTTACCAATCTTCCAAGTCTGACATAGTGCAGCCGAGGAGTTACTACTTTGGTGTCCAGGTCTTTACCTATGATGAACTAGAGGAAGCTACCAAAAACTTTGACCCTTCTAGAGAACTTGGCGAGGGAGGTTTTGGCACTGTTTACAAAGGTGAACTCAAAGATGGACGTATAGTTGCAGTGAAACGCCATTATGAAAGCAACGCTAGACGTATTGCCCAGTTCATGAATGAAGTACAGATTCTAGCCCGCTTAAGGCACAAGAACCTTGTGACACTCTTTGGATGCACCTCTAAACATAGCAGAGAACTTCTCCTTGTTTATGAGTTCATACCTAATGGAACACTGGCTGATCATCTTCAAGAAAGAAGCTCAAAATCAAATTTACTCCCTTGGCCTATAAGGTTGAACATTGCAGTTGAAACGGCTGAGGCTCTAGCCTACCTACATGCACAAGATGTCATACACCGTGATGTTAAAACCAACAACATTCTCCTTGATGATAAATTCCGCGTCAAGGTTGCTGATTTTGGTCTCTCAAGGGATTTCCCAAAGGATGTCACTCACGTGTCAACTGTTCCACAGGGAACACCTGGTTATGTTGACCCTGAGTACTATAAGTGCTACCAACTCACTGATAAAAGTGATGTTTATAGCTTTGGAGTGGTCTTGGTTGAGCTCATATCATCATTACAAGCTGTGGACATCAACAGGCATCGCAATGATGTGAACTTGGCAAGCATGGCTGTCAATAAAATTCAGAACCAGGAACTGCATGAGTTGGTTGATCCTTATCTTGGGTTTGAGAGGGATAATGCTATAAGGAGGATGACAACCGCAGTGGCAGAATTGGCCTTTAGATGTTTGCAGCCGGAAAGAGAGATAAGACCCTCTATGGATGAGGTGTTGGAGATCTTGAGAGGAATCAAGAGTGATGACCTTGGTGCAAGGGCAGAGACAGAAGTGTTGGAAGTTAGGACAGATGAAGTTAGGCTTTTGAAGCTGGTTCCTTCCCCATTTTCACCAGATTCAGTTGTTGATAAATGGGTTAGCGGCTCCTCTGTATCTAATTCCTCATAG	2673	0.4351	TRLALEEDRVINYLLAICNRAKCQILFLSSLLKMQLLQAIFFSFLVITIILNQIPISSCADNVHYLRCSSSFQCANLKNLSYPFWGFSRPQYCGHPAFKLQCTGEVAAVTIMSESYKVLEVSDSNHRLKVVRTEVLETNSTVENLKDSLDSGFGVEWDANNSLCDECQNSGGHCGYNVSSSEFSCYCRDGSFPSSCKSDKETPTNKQQTMLFIWSANIIIAILITSLHHTTSLPPHASLSSCHVSSFNCGAITNLSYPFTGGDRPSFCGPPQFHLNCQNGVVPELNISSVSYRVIGINSVARTLTLARLDLWNETCTHVYVNSTFDDPSFSYGLGNQNLTLFYECKPTSAFTKTPANLFHCESNGYKNNSYSLVGPFPLDPIIGVVECDEHVEVPIFVEQAERLIENRSLLEEVLMKGFNVNYTNIYDSECVECLGSGGYCGFDSDNNEPICICGDHLCPTPDKRSSKVGVVIGVTVGGVVVLVAILGCVYFVMQRRRKIAYKSQRSSELFMAPLSGDTFTSTTNTSQSVSSYQSSKSDIVQPRSYYFGVQVFTYDELEEATKNFDPSRELGEGGFGTVYKGELKDGRIVAVKRHYESNARRIAQFMNEVQILARLRHKNLVTLFGCTSKHSRELLLVYEFIPNGTLADHLQERSSKSNLLPWPIRLNIAVETAEALAYLHAQDVIHRDVKTNNILLDDKFRVKVADFGLSRDFPKDVTHVSTVPQGTPGYVDPEYYKCYQLTDKSDVYSFGVVLVELISSLQAVDINRHRNDVNLASMAVNKIQNQELHELVDPYLGFERDNAIRRMTTAVAELAFRCLQPEREIRPSMDEVLEILRGIKSDDLGARAETEVLEVRTDEVRLLKLVPSPFSPDSVVDKWVSGSSVSNSS	890

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr12057g00001	890	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	540	641	-	-
	Mupr12057g00001	890	ProSitePatterns	Protein kinases ATP-binding region signature.	571	593	IPR017441	GO:0005524
	Mupr12057g00001	890	Gene3D	Phosphorylase Kinase; domain 1	537	641	-	-
	Mupr12057g00001	890	Pfam	Wall-associated receptor kinase galacturonan-binding	68	132	IPR025287	GO:0030247
	Mupr12057g00001	890	Pfam	Wall-associated receptor kinase galacturonan-binding	246	307	IPR025287	GO:0030247
	Mupr12057g00001	890	CDD	STKc_IRAK	571	840	-	-
	Mupr12057g00001	890	Pfam	Protein kinase domain	568	835	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mupr12057g00001	890	SUPERFAMILY	Protein kinase-like (PK-like)	544	841	IPR011009	-
	Mupr12057g00001	890	Pfam	Wall-associated receptor kinase C-terminal	124	190	IPR032872	-
	Mupr12057g00001	890	Pfam	Wall-associated receptor kinase C-terminal	384	456	IPR032872	-
	Mupr12057g00001	890	FunFam	Wall-associated receptor kinase-like 20	642	850	-	-
	Mupr12057g00001	890	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	685	697	IPR008271	GO:0004672\|GO:0006468
	Mupr12057g00001	890	SMART	serkin_6	565	836	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mupr12057g00001	890	PIRSF	SRK	439	865	IPR024171	GO:0004674
	Mupr12057g00001	890	PIRSF	SRK	77	250	IPR024171	GO:0004674
	Mupr12057g00001	890	PANTHER	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4	222	885	IPR044652	GO:0004672
	Mupr12057g00001	890	ProSiteProfiles	Protein kinase domain profile.	565	840	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mupr12057g00001	890	Gene3D	Transferase(Phosphotransferase) domain 1	642	850	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr12057g00001	Mupr-Chr12057	1343	8243	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr12057g00001	247	890	Receptor kinase-like Gene Family	AT1G25390	42.337	4.44e-146	444

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK_LRK10L-1	Mupr12057g00001		Pkinase	4.8e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr12057g00001	-		-	gmx:100780940	1044.26