Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12028g00001 ATGTCGTTTAGGAGTATGATCCTGGAAAGGAAGGGTTTTGAGGTGAAGTTTGGGTATAGCATGAGATGGAGGTGTGAGTCTGAGAGTGATGGCCTGAAGCAGAGTTGTTGGGCTAACATGCCACCTGAGCTTTTGAGGGATGTCCTCATCAGGATTGAGGCCTCTCAGGATTCCTGGCCTGCCCGCAAAAACGTTGTTGCCTGCGCCGGTGTTTGCCGCACTTGGAGACAAATCATGAAGGATATTGTCAAATCCCCTCAACTATCTGCCAACTTGACTTTCCCTATCTCCTTGAAGCAGCCTGGTCCAAGGGACTCTCTTGTTCGTTGCTATATTAAACGTAATCGCAGTAATCAAACATATTTTCTGTTTCTTAGTTTAAGCAATGCCTCAACTGATGATGGCAAGTTCCTTCTTTCTGCACGCAAGTGTCGACGTGCAACTCACACTGACTATATCATCTCTCTGAACTGCGATGATGTATCAAGAGGGAGTAGTACCTATATTGGCAAGTTGAGATCAAACTTTCTGGGCACCAAGTTCACCGTGTATGATGCACACCCTCCAATTTATGGAGCCAAAGTTACAAAGTCTCGTTCCACCAGGCTAGTTAGTCTCAAGCAAGTTTCTCCAAGAGTTCCTGCTGGCAACTATCCCATTGCTCATGTCTCATATGATCTGAATGTTTTGGGCTCTAGGGGGCCTAGAATAATGCAATGTGTTATGGATGCCATCCCTGCCTCAGCTGTTGAACCTGGAGGTGTAGCCCCAACACAGACTCAATTTCTTCATAACAGAATTGATACTTCTCCATCCATCCCTTTCTTTAGATCAAAATCAACCCGCATGGACCATCTCCCATCAGTACCTTTGACTTGTCAAAATGAGGGGATGCTGGTATTACGAAACAAGTCCCCAAGGTGGCACGAACATCTTCAATGCTGGTGTCTGAATTTCAACGGGCGAGTGACAGTTGCTTCAGTTAAAAATTTCCAGCTGGTTGCTTCTCCTAAAAATGGAGTCTCTGAGCAGGCCCAGGAAAATGTTATTCTACAGTTTGGAAAAGTTGGAAAGGATGAATTCAACATGGATTATCAGTATCCAATCTCTGCCTTTGAAGCATTTGCAATCTGCCTTAGCAGCTTTGACACCAAGATTGCTTGTTTTAACCAGTCGTGCTGGTGGTTGGAATTCCACAAACAATTAGTCCTTGAGCAAATTATAAGTATTTTGCAGGGAAGTCCTTTATTAATATCCATCTCTGAAGCCCTGGTCCTATGGATTAAGCTAGGATGGAAGAAGGAATACAAATATATTGAAATTCTGAAAACAAGACTTTGTCCTTCTGCTGTGCAACATGTGATGAGCGTAAAAGCTACAGAACAAAAGCCACCTTGTATAGTAAGACAA 1410 0.4376 MSFRSMILERKGFEVKFGYSMRWRCESESDGLKQSCWANMPPELLRDVLIRIEASQDSWPARKNVVACAGVCRTWRQIMKDIVKSPQLSANLTFPISLKQPGPRDSLVRCYIKRNRSNQTYFLFLSLSNASTDDGKFLLSARKCRRATHTDYIISLNCDDVSRGSSTYIGKLRSNFLGTKFTVYDAHPPIYGAKVTKSRSTRLVSLKQVSPRVPAGNYPIAHVSYDLNVLGSRGPRIMQCVMDAIPASAVEPGGVAPTQTQFLHNRIDTSPSIPFFRSKSTRMDHLPSVPLTCQNEGMLVLRNKSPRWHEHLQCWCLNFNGRVTVASVKNFQLVASPKNGVSEQAQENVILQFGKVGKDEFNMDYQYPISAFEAFAICLSSFDTKIACFNQSCWWLEFHKQLVLEQIISILQGSPLLISISEALVLWIKLGWKKEYKYIEILKTRLCPSAVQHVMSVKATEQKPPCIVRQ 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12028g00001 470 FunFam Tubby-like F-box protein 94 389 - -
Mupr12028g00001 470 Pfam F-box domain 37 83 IPR001810 GO:0005515
Mupr12028g00001 470 PRINTS Tubby superfamily signature 319 335 IPR000007 -
Mupr12028g00001 470 PRINTS Tubby superfamily signature 152 168 IPR000007 -
Mupr12028g00001 470 PRINTS Tubby superfamily signature 217 244 IPR000007 -
Mupr12028g00001 470 PRINTS Tubby superfamily signature 367 389 IPR000007 -
Mupr12028g00001 470 PRINTS Tubby superfamily signature 346 365 IPR000007 -
Mupr12028g00001 470 PRINTS Tubby superfamily signature 301 318 IPR000007 -
Mupr12028g00001 470 PRINTS Tubby superfamily signature 168 192 IPR000007 -
Mupr12028g00001 470 Pfam Tub family 98 384 IPR000007 -
Mupr12028g00001 470 Gene3D Tubby Protein; Chain A 97 383 IPR025659 -
Mupr12028g00001 470 CDD F-box_AtTLP-like 37 81 - -
Mupr12028g00001 470 SUPERFAMILY Tubby C-terminal domain-like 87 388 IPR025659 -
Mupr12028g00001 470 SUPERFAMILY F-box domain 29 81 IPR036047 GO:0005515
Mupr12028g00001 470 PANTHER TUBBY-RELATED 29 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12028g00001 Mupr-Chr12028 4962 8859 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12028g00001 1 388 TUB Transcription Factor Family AT2G47900 70.936 0.0 577
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mupr12028g00001 Tub 1.5e-107 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12028g00001 K19600 - gmx:100809257 733.406