Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12010g00002 ATGGGTAACATAGGAAGCAACAGCCGTCGGAGGCACGGCGGCAGCGGCAGCGGGAGGCGGATTCACCCGCCGCCTCCGCCGGTGATGCCGCCGCCGGAGGTCACGGCGAACCGATTCGTGTACCCTCCCGCCGCCACGCCGTATCACAACTACCCCGGTTTCTATCCGCCGCCGACCACCATGCCGGCGCCGTTGCCGGCACCGTACGATCACCACCACCGTCCGGCGGTGGACCCGATGTGGGGGCGGTACCCGGCACCACTGGCACCGGCACCGGCACCGGCACTGGCACCGGCGCCCTACGTGGAGCACCAGAAGGCGGTTACTATAAAGAACGATGTCAACATCAAGAAGGAGACGCTAAGGATTGAGCCTGATGACGATAATCCTGGCCGTTTTCTCGTGTCATTTACGTTTGATGCCACCGTTTCGGGGAGCATCACCATACTTTTCTTTGCAAAAGAAGAGGAAGATTGCACCCTAACCCCAATGAAGGAAAATGTTCTTCCACCCGTGACTGTAAATTTCGAGCAAGGTCTTGGCCAGAAGTTTAAGCAGCCAGCTGGAACTGGCATAGATTTTTCAGTATTTGAGGTGTCTGAGTTATTGAGTGTGGGGGACATGGATGTCTATCCTGTTGCAATTAAAGCAGATGCATCCTCTGGCAACCGTGATGGATCAAATGAAACTCCAACATCTGGCAACACAAACTCTCAGATAACTCAAGCAGTGTTTGAGAAGGAGAAAGGAGAGTTGCAAGTGAAGGTTGTTAAGCAGATCTTATGGGTAGATAGAATGAGGTATGAACTGCAGGAGATATATGGTATTGGAAATTCAGTTGAGAGTGACTTGGATGGGAATGACCCAGGAAAAGAGTGTGTTATATGCTTGTCAGAACCTCGAGACACAACCGTCCTTCCATGTCGCCACATGTGTATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAGACACACAGATGTCCAATCTGCAGACAACCAGTTGAGAGGCTTTTGGAGATCAAAGTTGGGCCTGATCCTGAGGAGTGA 1050 0.5267 MGNIGSNSRRRHGGSGSGRRIHPPPPPVMPPPEVTANRFVYPPAATPYHNYPGFYPPPTTMPAPLPAPYDHHHRPAVDPMWGRYPAPLAPAPAPALAPAPYVEHQKAVTIKNDVNIKKETLRIEPDDDNPGRFLVSFTFDATVSGSITILFFAKEEEDCTLTPMKENVLPPVTVNFEQGLGQKFKQPAGTGIDFSVFEVSELLSVGDMDVYPVAIKADASSGNRDGSNETPTSGNTNSQITQAVFEKEKGELQVKVVKQILWVDRMRYELQEIYGIGNSVESDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTHRCPICRQPVERLLEIKVGPDPEE 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12010g00002 349 ProSiteProfiles Zinc finger RING-type profile. 293 332 IPR001841 -
Mupr12010g00002 349 FunFam probable E3 ubiquitin-protein ligase LOG2 277 342 - -
Mupr12010g00002 349 CDD mRING-HC-C3HC5_MGRN1-like 291 332 IPR045195 -
Mupr12010g00002 349 MobiDBLite consensus disorder prediction 221 238 - -
Mupr12010g00002 349 PANTHER MAHOGUNIN 1 342 IPR045194 GO:0061630
Mupr12010g00002 349 SMART ring_2 293 331 IPR001841 -
Mupr12010g00002 349 Pfam Zinc finger, C3HC4 type (RING finger) 291 337 - -
Mupr12010g00002 349 SUPERFAMILY RING/U-box 292 338 - -
Mupr12010g00002 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 342 IPR013083 -
Mupr12010g00002 349 MobiDBLite consensus disorder prediction 219 238 - -
Mupr12010g00002 349 MobiDBLite consensus disorder prediction 1 35 - -
Mupr12010g00002 349 MobiDBLite consensus disorder prediction 20 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12010g00002 Mupr-Chr12010 9363 12701 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12010g00002 86 312 C3H Transcription Factor Family AT3G09770 65.966 1.84e-104 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12010g00002 - - gmx:100789032 568.926