Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11988g00001 ATGTTTGAAACAATAAAGAGGCAGCCAGATATTGATGCTTATGACACTTCTGGTCGACAGGTAGATGATATTTCTGGAGATATAGAACTTAGGGAGGTCTGCTTTAGTTATCCTTCAAGACCTGATGAACAGATATTCAATGGATTTTCAATTTCAATATCAAGTGGTACTACTGCAGCTTTGGTAGGGCAAAGTGGGGGTGGGAAATCAACAGTTATTAGTTTAATTGAGAGATTTTATGATCCACAAGCTGGTGAAGTTCTCATTGATGGTATTAACCTCAAAGAATTTCAATTGAAATGGATCAGACAGAAAATAGGCCTTGTCAGCCAGGAGCCAGTTCTCTTTACTTGCAGCATTAAAGAAAATATTGCCTATGGTAAGGATGGGGCAACAGATGAAGAAATCAGAGCTGCAGCTGAACTTGCTAATGCTGCTAATTTCATAGATAAATTTCCCCATGGACTTGACACGATGGTTGGCGAGCATGGAACTCAGCTCTCCGGAGGTCAAAAACAAAGAATATCTATAGCAAGAGCAATTCTGAAGGACCCAAGAATTCTGCTCCTTGATGAAGCTACAAGTGCTCTTGATGCAGAGTCAGAGAGAGTGGTGCAAGAGACACTGGACAGAATTATGATAAACCGAACAACTGTCATTGTAGCCCATCGCCTAAGCACAATAAGGAATGCTGATATGATTGCAGTTATTCATCAAGGAAAAGTAATAGAAAAAGGCACACATGCTGAGCTCACTAAAGATCCTGATGGAGCTTTTAGCCAACTCATTAGATTGCAAGAAATTAAAAGAGAGTCAAAAGAGCATGATGCAAATGACTCAGGCAGGCCAGAAAACTTTGTAGATTCTGAACAACAATCAAGCCAAAGGTTTTCTTTCTCTCAATCTTTAAGCCGAGGATCATCTGGAAGAGGAAACAGCAGTCAGCACTCATTCAGAATATCAAATGCTATGCCTACCACACTAGATCTCTTGGAAACATCAGAAGGAGGGCCTGAAGTTCTTCCGTCAGCAGCATCACATAAATCTCAAGAAGTTTCATTTCTCCGCATTGCATATCTTAACAAGCCTGAAATCCCAGTGTTACTCATGGGGACTCTAGCAGCAGCAGCAACTGGGGCAATACTACCCATCGTGGGGCTTCTTCTCTCCCATATGATAAATACTTTCTTTGAGCCTGCAGATGAACTCCGTAAAGACTCAAAGTTTTGGGCATTAATATTCGTTGCCCTTAGTGTGGCTGGCTTCATATTTATTCCATTAAGGTCCTACTTTTTTGCTGTAGCTGGTTCTAAGTTGATAAAAAGGATCCGGCTAATGTGTTTTGAGAAAATAATTCACATGGAAATAGGCTGGTTTGATAAAGCTGAGAATTCAAGTGGAGCACTTGGAGCAAGGCTGTCAACTGATGCGGCTTCTATTCGAACTTTGGTTGGGGATGCACTTGGTTTGCTTGTTCAAGATATTGCTACAGTAATTATAGCCTTGGTAATTGCCTTTGAGGCAAACTGGCAGCTTTCTCTCATCATTCTTGTCTTGGTGCCGCTAGTATTACTAAATGGATATATTCAAGTGAAGTCCATGCAAGATTTCAGCACCAATGCAAAGAAACTCTATGAGGAAGCAAGTCAAGTAGCGGATGATGCAGTAGCAAATATGAGAACAGTTGCCGCTTTCTGTGCAGAAGAGAAGGTGATGGAGTTATACCAGAAGAAATGTGTAGGACCAATTCAGACAGGTATAAGGCAAGGTTTAGTCAGCGGAACAGGTTTCGGGTTATCACTCTTCTTTGTGTTCTCTGTTTATGCATGCAGTTTTTATGCTGGTGCCAGACTTGTTGAGAATGGCAAAACATCATTCTCAGATGTTTTCCGTGTATTTTATGCTCTCATAATGGCAGCTATAGCAATGTCACAAACTGGCTTCGTGACCCCAGCTGCGAGTAAAGCAAAAAGTTCTGTTGCTTCTATATTTGCTATTCTTGACCAGAAATCAAAAATAGACCCCAGTGATGAATCTGGAATGACATTGCAAGAAGTGAAGGGAGAGATTGAGTTCCACCATGTCACTTTCAAGTATCCAACCAGGCCTAATGTTCTTGTATTCAGAGATCTTTCCTTGACCATTCATGCAGGAGAGATAGTTGCTCTAGTAGGAGAAAGTGGAAGTGGAAAGTCAACAGTGATTTCATTGTTACAAAGATTTTATGACCCAGATTCAGGTCAGATTACACTGGATGGAACAGAAATCCAAAAGCTACAACTTAAATGGTTTAGGCAGCAGATGGGATTGGTAAGCCAGGAGCCTGTGTTGTTTAATGACACCATCCGAGCCAATATTGCTTATGGAAAAGGTGGTGATGCAACAGAAGCTGAAATTATAGCTGCAGCTGAACTGGCAAATGCCCACAAGTTCATTAGCAGTTTGCAGCAGGGTTATGATACATTAGTAGGGGAGAGAGGGATTCAACTATCTGGAGGGCAGAAGCAGCGGGTGGCAATTGCAAGAGCCATAGTAAAGAGTCCAAAAATATTACTGCTAGATGAAGCCACCAGTGCACTTGATGCTGAGTCTGAAAGAGTGGTTCAGGATGCACTTGACCGAGTGACGGTGGACAGAACCACAATTGTGGTGGCCCACAGGTTATCTACCATAAAGGATGCAGATACAATTGCAGTGGTTGAAAATGGAGTTATTGCAGAGAAAGGAAAGCATGACACTTTGCTTAACAAAGGTGGTACATATGCTTCCTTAGTAGCACTACATATTAATGCTTCTTCATCATAG 2805 0.4153 MFETIKRQPDIDAYDTSGRQVDDISGDIELREVCFSYPSRPDEQIFNGFSISISSGTTAALVGQSGGGKSTVISLIERFYDPQAGEVLIDGINLKEFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAAAELANAANFIDKFPHGLDTMVGEHGTQLSGGQKQRISIARAILKDPRILLLDEATSALDAESERVVQETLDRIMINRTTVIVAHRLSTIRNADMIAVIHQGKVIEKGTHAELTKDPDGAFSQLIRLQEIKRESKEHDANDSGRPENFVDSEQQSSQRFSFSQSLSRGSSGRGNSSQHSFRISNAMPTTLDLLETSEGGPEVLPSAASHKSQEVSFLRIAYLNKPEIPVLLMGTLAAAATGAILPIVGLLLSHMINTFFEPADELRKDSKFWALIFVALSVAGFIFIPLRSYFFAVAGSKLIKRIRLMCFEKIIHMEIGWFDKAENSSGALGARLSTDAASIRTLVGDALGLLVQDIATVIIALVIAFEANWQLSLIILVLVPLVLLNGYIQVKSMQDFSTNAKKLYEEASQVADDAVANMRTVAAFCAEEKVMELYQKKCVGPIQTGIRQGLVSGTGFGLSLFFVFSVYACSFYAGARLVENGKTSFSDVFRVFYALIMAAIAMSQTGFVTPAASKAKSSVASIFAILDQKSKIDPSDESGMTLQEVKGEIEFHHVTFKYPTRPNVLVFRDLSLTIHAGEIVALVGESGSGKSTVISLLQRFYDPDSGQITLDGTEIQKLQLKWFRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIIAAAELANAHKFISSLQQGYDTLVGERGIQLSGGQKQRVAIARAIVKSPKILLLDEATSALDAESERVVQDALDRVTVDRTTIVVAHRLSTIKDADTIAVVENGVIAEKGKHDTLLNKGGTYASLVALHINASSS 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11988g00001 934 CDD ABC_MTABC3_MDL1_MDL2 690 925 - -
Mupr11988g00001 934 ProSitePatterns ABC transporters family signature. 167 181 IPR017871 GO:0005524|GO:0016887
Mupr11988g00001 934 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 266 IPR027417 -
Mupr11988g00001 934 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 369 655 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Mupr11988g00001 934 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 690 927 IPR003439 GO:0005524
Mupr11988g00001 934 CDD ABC_6TM_Pgp_ABCB1_D2_like 358 673 - -
Mupr11988g00001 934 MobiDBLite consensus disorder prediction 271 318 - -
Mupr11988g00001 934 Gene3D ABC transporter type 1, transmembrane domain 1 600 IPR036640 GO:0005524|GO:0016020
Mupr11988g00001 934 CDD ABC_MTABC3_MDL1_MDL2 28 266 - -
Mupr11988g00001 934 Pfam ABC transporter 709 858 IPR003439 GO:0005524
Mupr11988g00001 934 Gene3D - 26 279 IPR027417 -
Mupr11988g00001 934 SUPERFAMILY ABC transporter transmembrane region 357 674 IPR036640 GO:0005524|GO:0016020
Mupr11988g00001 934 Pfam ABC transporter transmembrane region 368 640 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Mupr11988g00001 934 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 679 927 IPR027417 -
Mupr11988g00001 934 Gene3D - 680 929 IPR027417 -
Mupr11988g00001 934 FunFam ABC transporter B family member 1 680 929 - -
Mupr11988g00001 934 FunFam ABC transporter B family member 1 18 267 - -
Mupr11988g00001 934 FunFam ABC transporter B family member 1 348 653 - -
Mupr11988g00001 934 ProSitePatterns ABC transporters family signature. 830 844 IPR017871 GO:0005524|GO:0016887
Mupr11988g00001 934 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 28 264 IPR003439 GO:0005524
Mupr11988g00001 934 PANTHER ABC TRANSPORTER B FAMILY 345 927 IPR039421 -
Mupr11988g00001 934 Gene3D ABC transporter type 1, transmembrane domain 652 679 IPR036640 GO:0005524|GO:0016020
Mupr11988g00001 934 Pfam ABC transporter 47 195 IPR003439 GO:0005524
Mupr11988g00001 934 MobiDBLite consensus disorder prediction 284 318 - -
Mupr11988g00001 934 FunFam Uncharacterized protein 654 680 - -
Mupr11988g00001 934 SMART AAA_5 55 227 IPR003593 GO:0016887
Mupr11988g00001 934 SMART AAA_5 717 910 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr11988g00001 Mupr-Chr11988 4200 8232 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr11988g00001 1 928 Calmodulin-binding Proteins AT2G36910 45.766 0.0 815
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr11988g00001 K05658 - gmx:100777713 1555.81